Skip to main content
. Author manuscript; available in PMC: 2019 Apr 5.
Published in final edited form as: Stat Appl Genet Mol Biol. 2018 Dec 15;17(6):/j/sagmb.2018.17.issue-6/sagmb-2018-0038/sagmb-2018-0038.xml. doi: 10.1515/sagmb-2018-0038

Tab. 1:

Summary of simulation results for Model A (n=550 and p=500). FD: numbers of false discoveries; FN: numbers of false negatives; FDP: proportions of false discovery; Power: empirical probabilities to identify informative predictors; FD+FN: FD and FN combined.

|β| Methods FD FN FDP Power FD+FN

0.25 Univariate FDR 14.91 4.15 0.485 0.793 19.06
Cross-Validation 62.22 0.09 0.758 0.996 62.31
Knockoff 0.05 18.01 0.025 0.100 18.06
PS-Fdr 1.83 1.70 0.091 0.915 3.53
0.30 Univariate FDR 19.08 2.92 0.528 0.854 22.00
Cross-Validation 62.47 0.03 0.758 0.999 62.50
Knockoff 0.03 17.94 0.014 0.103 17.97
PS-Fdr 1.83 0.65 0.086 0.968 2.48
0.35 Univariate FDR 22.31 2.27 0.557 0.887 24.58
Cross-Validation 62.81 0.01 0.759 1.000 62.82
Knockoff 0.05 17.44 0.019 0.128 17.49
PS-Fdr 1.91 0.29 0.088 0.986 2.20
0.40 Univariate FDR 24.46 1.98 0.576 0.901 26.44
Cross-Validation 62.99 0.00 0.759 1.000 62.99
Knockoff 0.11 16.92 0.034 0.154 17.03
PS-Fdr 1.85 0.05 0.085 0.998 1.90