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. 2019 Mar 13;75(Pt 4):217–226. doi: 10.1107/S2053230X19001201

Table 4. Structure solution and refinement.

Values in parentheses are for the outer shell.

Crystal form Monoclinic Orthorhombic Tetragonal
PDB entry/model used in molecular replacement 1o2d Monoclinic form Orthorhombic form
Resolution range (Å) 49.6–2.4 (2.5–2.4) 33.0–2.1 (2.2–2.1) 29.00–1.91 (2.00–1.91)
Completeness (%) 78.88 (19.35) 89.82 (32.73) 94.83 (80.76)
σ Cutoff None None None
No. of reflections used 22218 39750 28792
No. of reflections, working set 21068 (402) 37732 (1057) 26795 (1997)
No. of reflections, test set 1150 (21) 2018 (55) 1774 (127)
Final R cryst 0.14 (0.30) 0.15 (0.35) 0.13 (0.29)
Final R free 0.21 (0.35) 0.20 (0.39) 0.19 (0.35)
Cruickshank DPI 0.20 0.23 0.14
No. of non-H atoms
 Protein 5852 5994 3165
 Ions 1 1 95
 Coenzymes 79 48 31
 Other ligands§ 14 12
 Water 167 293 462
 Total 6099 6350 3765
R.m.s. deviations
 Bonds (Å) 0.003 0.005 0.008
 Angles (°) 0.61 0.96 1.12
Average B factors (Å2)
 Protein 66 45 41
 Ions 70 65 61
 Coenzymes 80 41 72
 Other ligands§ 73 100
 Water 57 49 52
 All atoms 66 46 43
Ramachandran plot
 Favored regions (%) 97.2 96.4 97.9
 Additionally allowed (%) 2.8 3.5 2.1
 Outliers (%) 0.0 0.1 0.0
PDB code 6c75 6c76 6c7l

Ions are Fe3+ in molecules A of PDB entries 6c75 and 6c76 and PO4 3− in PDB entry 6c7l.

Coenzymes are NADP (NAP) and 2′-monophosphoadenosine 5′-diphosphate (ATR). NADP is present in molecules A of PDB entries 6c75 and 6c76, and ATR is present in PDB entry 6c7l and molecule B of PDB entry 6c75.

§

Other ligands are acetic acid (ACY) and triethylene glycol (PGE) in PDB entry 6c76 and 1,2-ethanediol (EDO) and MPD in PDB entry 6c7l.