Table 4. Large-effect SNPs and InDels detected in neo-tetraploid rice and its autotetraploid parents.
Neo-tetraploid rice/T44 | Neo-tetraploid rice/T45 | |||
---|---|---|---|---|
SNP | INDEL | SNP | INDEL | |
Acceptor splice site | 22 | 8 | 17 | 13 |
Donor splice site | 23 | 9 | 19 | 13 |
Start lost | 29 | 4 | 26 | 5 |
Stop gained | 169 | 2 | 116 | 6 |
Stop lost | 62 | 2 | 46 | 4 |
Frame shift | 0 | 416 | 0 | 351 |
Total | 305 | 441 | 224 | 392 |
Note: T44 and T45 represent autotetraploid rice parents, including Jackson-4x and 96025, respectively.