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. 2019 Apr 5;14(4):e0214953. doi: 10.1371/journal.pone.0214953

Table 4. Large-effect SNPs and InDels detected in neo-tetraploid rice and its autotetraploid parents.

Neo-tetraploid rice/T44 Neo-tetraploid rice/T45
SNP INDEL SNP INDEL
Acceptor splice site 22 8 17 13
Donor splice site 23 9 19 13
Start lost 29 4 26 5
Stop gained 169 2 116 6
Stop lost 62 2 46 4
Frame shift 0 416 0 351
Total 305 441 224 392

Note: T44 and T45 represent autotetraploid rice parents, including Jackson-4x and 96025, respectively.