Skip to main content
. Author manuscript; available in PMC: 2019 Apr 5.
Published in final edited form as: Annu Rev Anim Biosci. 2018 Oct 31;7:41–64. doi: 10.1146/annurev-animal-020518-115005

Figure 4.

Figure 4

Comparing RNA sequencing (RNA-seq) expression quantification across different species with Comparative Annotation Toolkit (CAT). Kallisto (109) protein-coding gene-level expression for chimpanzee induced pluripotent stem cell (iPSC) RNA-seq is compared with human across all of the chimpanzee annotation and assembly combinations as well as when mapped directly to human. In all cases, the x-axis is the transcripts per million of human iPSC data mapped to GRCh38 annotated with GENCODE V27. The highest correlation (Pearson r = 0.96) is seen when comparing Clint (panTro6) annotated with CAT to GRCh38. The value p is the p-value of observing the Pearson correlation.