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. 2019 Apr 5;6:59. doi: 10.1038/s41438-019-0141-7

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — Haploblock markers of LG 1 plotted for position on the GDDH13 reference WGS compared to that on the iGL genetic linkage map. = matching order. = matching after shuffling within genetic bins. , = the two positions of markers with two full hits on chromosome 1 whereas their cluster plots showed them to be true single locus markers; only the former position matched the iGL map (one haploblock with five SNPs jointly representing two continuous stretches of 2.9 kb with 99.8% sequence similarity). = cM-Mb mismatches that could not be resolved through shuffling on the iGL map and for which calls and hit-qualifications were appropriate; they matched with a 0.8 to 5.5 Mb shift along the chromosome (12 haploblocks with 35 SNPs). , = no hit on chromosome 1 but on another chromosome (four haploblocks with seven SNPs) or no hit at all (three haploblocks with four SNPs), respectively; their physical coordinates were estimated based on the nearest matching flanking markers on the iGL map

Inline graphic — Haploblock markers of LG 1 plotted for position on the GDDH13 reference WGS compared to that on the iGL genetic linkage map. = matching order. = matching after shuffling within genetic bins. , = the two positions of markers with two full hits on chromosome 1 whereas their cluster plots showed them to be true single locus markers; only the former position matched the iGL map (one haploblock with five SNPs jointly representing two continuous stretches of 2.9 kb with 99.8% sequence similarity). = cM-Mb mismatches that could not be resolved through shuffling on the iGL map and for which calls and hit-qualifications were appropriate; they matched with a 0.8 to 5.5 Mb shift along the chromosome (12 haploblocks with 35 SNPs). , = no hit on chromosome 1 but on another chromosome (four haploblocks with seven SNPs) or no hit at all (three haploblocks with four SNPs), respectively; their physical coordinates were estimated based on the nearest matching flanking markers on the iGL map