Table 1.

Genes differentially regulated by VqmR pulse expression

Gene	Descriptiona	Fold changeb
vc0789	Hypothetical protein	−12.0
vc1865 c	Hypothetical protein	−9.6
vca0068 c	Methyl-accepting chemotaxis protein	−5.7
vc0865	Hypothetical protein	−3.4
ulaA	PTS system ascorbate-specific transporter	−3.3
vca0591 c	Peptide ABC transporter	−3.2
vca0590 c	Peptide ABC transporter permease	−3.0
vc1063 c	Acyl-CoA thioesterase II	−2.9
aphA	PadR family transcriptional regulator	−2.8
ndk	Nucleoside-diphosphate kinase	−2.5
vpsT c	LuxR family transcriptional regulator	−2.5

^aDescription based on the annotation at KEGG (https://www.genome.jp/kegg).

^bFold change obtained by transcriptomic analysis of pBAD-driven VqmR expression using RNA-seq. Genes that were at least 2.5-fold differentially regulated and were statistically significant (Bonferroni ≤ 1E–10) are listed.

^cVqmR target genes previously reported in (24).