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. 2019 Feb 8;47(6):e36. doi: 10.1093/nar/gkz061

Figure 6.

Figure 6.

DeepRibo example annotations displayed alongside the ribo-seq input signal and RefSeq annotations. The data is formatted using the GWIPS-viz browser (43) and is hosted publicly (see Supplementary Data). On every track is displayed (from top to bottom): ribo-seq signal (sense: orange, antisense: blue), TISs of all ORF samples present in the test set, annotations predicted by DeepRibo not in agreement with the RefSeq assembly (Predicted ORF) and the RefSeq genome annotations used to label the data (Labeled ORF). (A) The highest ranking proteoform prediction (gene: PqqL, rank: 231) for E. coli. (B) The highest ranking proteoform prediction (gene: UbiE, rank: 131) for S. aureus. (C) The highest ranking novel protein for E. coli with no pBLAST alignments (rank: 1302). (D) An example of a predicted proteoform in a region with overlapping genes (gene: ybhF, rank: 941).