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. 2019 Apr 6;8(4):giz033. doi: 10.1093/gigascience/giz033

Table 1:

Assembly statistics of 7 aphid genomes

Species R. maidis A. glycines M. persicae * A. pisum M. cerasi R. padi D. noxia *
Sequencing source [this study] [33] [29] [27] [28] [28] [31]
Genome assembly
  Assembly size (Mb) 326.0 302.9 347.3 541.6 405.7 319.4 393.0
 Contig count 689 66,000 8,249 60,623 56,508 16,689 49,357
 Contig N50 (bp) 9,046,396 15,844 144,275 28,192 17,908 96,831 12,578
 Scaffold count 220 8,397 4,022 23,924 49,286 15,587 5,641
 Scaffold N50 (bp) 93,298,903 174,505 435,781 518,546 23,273 116,185 397,774
 Maximum scaffold length (Mb) 94.2 1.4 2.2 3 0.2 0.6 2.1
 Minimum scaffold length (kb) 1.1 2 0.9 0.2 1 1 0.9
Genomic features
 Transcript length (bp) 1,834.6 1,520.1 1,838.7 1,964.1 NA NA NA
 CDS length (bp) 1,242.04 1,240.3 1,328.3 1,157.6 952.7 1,155.09 970.2
 Exon length (bp) 210.02 245.5 299.2 394.7 NA NA NA
 Exon count/gene 6.31 6.19 6.14 4.97 NA NA NA
Gene counts [source] 17,629 19,182 [33] 18,529 [29] 36,195 [27] 28,408 [28] 28,542 [28] 19,097 [31]
[this study] 25,726 [32] 27,676 [32] 28,688 [32] 26,286 [32] 25,987 [32]
18,433 [29] 31,885 [30]
23,822 [28]
24,742 [28]
21,441 [28]

NA: This information could not be retrieved from the annotation files.

*More than 1 sequenced lineage.