Table 1:
Species | R. maidis | A. glycines | M. persicae * | A. pisum | M. cerasi | R. padi | D. noxia * |
---|---|---|---|---|---|---|---|
Sequencing source | [this study] | [33] | [29] | [27] | [28] | [28] | [31] |
Genome assembly | |||||||
Assembly size (Mb) | 326.0 | 302.9 | 347.3 | 541.6 | 405.7 | 319.4 | 393.0 |
Contig count | 689 | 66,000 | 8,249 | 60,623 | 56,508 | 16,689 | 49,357 |
Contig N50 (bp) | 9,046,396 | 15,844 | 144,275 | 28,192 | 17,908 | 96,831 | 12,578 |
Scaffold count | 220 | 8,397 | 4,022 | 23,924 | 49,286 | 15,587 | 5,641 |
Scaffold N50 (bp) | 93,298,903 | 174,505 | 435,781 | 518,546 | 23,273 | 116,185 | 397,774 |
Maximum scaffold length (Mb) | 94.2 | 1.4 | 2.2 | 3 | 0.2 | 0.6 | 2.1 |
Minimum scaffold length (kb) | 1.1 | 2 | 0.9 | 0.2 | 1 | 1 | 0.9 |
Genomic features | |||||||
Transcript length (bp) | 1,834.6 | 1,520.1 | 1,838.7 | 1,964.1 | NA | NA | NA |
CDS length (bp) | 1,242.04 | 1,240.3 | 1,328.3 | 1,157.6 | 952.7 | 1,155.09 | 970.2 |
Exon length (bp) | 210.02 | 245.5 | 299.2 | 394.7 | NA | NA | NA |
Exon count/gene | 6.31 | 6.19 | 6.14 | 4.97 | NA | NA | NA |
Gene counts [source] | 17,629 | 19,182 [33] | 18,529 [29] | 36,195 [27] | 28,408 [28] | 28,542 [28] | 19,097 [31] |
[this study] | 25,726 [32] | 27,676 [32] | 28,688 [32] | 26,286 [32] | 25,987 [32] | ||
18,433 [29] | 31,885 [30] | ||||||
23,822 [28] | |||||||
24,742 [28] | |||||||
21,441 [28] |
NA: This information could not be retrieved from the annotation files.
*More than 1 sequenced lineage.