Table 2.

60 CpG sites analyzed by MS-MLPA

CpG sites respect to ATG	Gene Name (HGDB)	Chromosome Location	CpG sites respect to ATG	Gene Name (HGDB)	Chromosome Location
72 bp to exon 2	APC	5q22	346 bp before	MGMT	10q26.3
4658 bp before	ATM	11q23	93 bp before	MGMT	10q26.3
157 bp after	CACNA1A	19p13.2	151 bp after	MGMT	10q26.3
32 bp before	CACNA1G	17q21.33	382 bp before	MGMT	10q26.3
8560 bp before	CASP8	2q33.2	74 bp after ex 1	MGMT	10q26.3
1168 bp before	CCND2	12p13.3	464 bp after	MGMT	10q26.3
1358 bp before	CCND2	12p13.3	661 bp before	PAX5	9p13
17 bp before	CD44	11p12	49 bp before	PAX6	11p13
411 bp before	CD44	11p12	43 bp before	PRDM2	1p36.21
42 bp before	CDH13	16q23.3	190 nt after	PYCARD	16p11.2
20 bp before	CDH13	16q23.3	651 bp before	RARB	3p24.2
31 bp after	CDKN2A	9p21.3	824 bp before	RARB	3p24.2
407 nt before	CHFR	12q24	888 bp before	RARB	3p24.2
400 nt before	CHFR	12q24	141 bp before	RASSF1	3p21.3
714 bp before	DAPK1	9q22	79 bp before	RASSF1	3p21.3
366,437 bp after	DLC1	8p22	18 bp before	RUNX3	1p36.11
366,993 bp after	DLC1	8p22	232 bp before	SCGB3A1	5q35
163 bp after	ESR1	6q25.1	17 bp before	SCGB3A1	5q35
112 bp after	ESR1	6q25.1	42 bp before	SFRP4	7p14.1
658 bp before	GATA5	20q13.3	82 bp after	SRFP4	10q24.1
103 bp after	GSTP1	11q13	275 bp before	SFRP5	7p14.1
245 bp before	GSTP1	11q13	316 bp before	SFRP5	10q24.1
11 bp before ex 1	HIC1	17p13	172 bp before	TIMP3	22q12.3
163 bp after	HTLF	3q25.1	300 bp before	TIMP3	22q12.13
953 bp before	ID4	6p22.3	10,905 bp before	TP53	17p13.1
319 bp before	ID4	6p22.3	29,790 bp before	TP73	1p36.32
305 bp before	IGSF4	11q23	29,551 bp before	TP73	1p36.3
72 bp before	IGSF4	11q23	220 bp after	TWIST1	7p21.2
464 nt after	KCNQ1	11p15.5	80 nt before	VHL	3P25
432 bp before	MGMT	10q26.3	412 bp before	WT1	11p13