REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse monoclonal antibody anti-β-actin (1:10000 for WB) | Sigma-Aldrich | Cat#A5441; RRID:AB_476744 |
Goat polyclonal antibody anti-DCC (A-20) (1:100 for WB) | Santa Cruz | Cat#sc-6535; RRID:AB_2245770 |
Rabbit anti-human Unc5c polyclonal antibody (1:500 for WB) | Abcam | Cat#ab91408; RRID:AB_2212873 |
Chicken polyclonal antibody anti-GFP (1:2000 for IF) | Aves Labs | Cat#GFP-1020; RRID:AB_10000240 |
Rabbit polyclonal antibody anti-Zic2 (1:1000 for IF) | This lab (previous study [55, 56, 57, 58]) | N/A |
Mouse neuron class III β-Tubulin monoclonal antibody (anti-Tuj1) (1:1000 for IF) | Covance | Cat#MMS-435P; RRID:AB_2313773 |
Rabbit specific beta III tubulin antibody (1:1000 for IF) | Abcam | Cat#ab18207; RRID:AB_444319 |
Mouse monoclonal antibody anti-Brn3a (1:300 for IF) | Millipore | Cat#MAB1585; RRID:AB_94166 |
Rabbit polyclonal antibody anti-calbindin D-28k (1:1000 for IF) | Swant | Cat#CB38; RRID:AB_2721225 |
Goat polyclonal antibody anti-ChAT (1:100 for IF) | Millipore | Cat#AB144P; RRID:AB_2079751 |
Mouse monoclonal antibody anti-Isl1/2 (39.4D5) (1:500 for IF) | Hybridoma Bank | Cat#39.4D5; RRID:AB_2314683 |
Bacterial and Virus Strains | ||
pAAV-CAG-tdTomato | Addgene | Cat#59462-AAV5 |
Chemicals, Peptides, and Recombinant Proteins | ||
Cholera toxin B subunit (CTB)-Alexa 594 | ThermoFisher | Cat#C22842 |
Cholera toxin B subunit (CTB)-Alexa 488 | ThermoFisher | Cat#C34775 |
Cholera toxin B subunit (CTB)-Alexa 647 | ThermoFisher | Cat#C34778 |
TEMED | Sigma-Aldrich | Cat#T9281 |
Acrylamide solution | Sigma-Aldrich | Cat#A4058 |
Lipofectamine 2000 | Thermo Fisher Scientific | Cat#11668019 |
Pencillin/Streptomycin | Sigma-Aldrich | Cat#P0781 |
cOmplete Mini EDTA-free protease inhibitor cocktail tablets | Sigma-Aldrich | Cat#11836170001 |
IGEPAL CA-630 | Sigma-Aldrich | Cat#I8896 |
Laemmliś buffer | Sigma-Aldrich | Cat#S3401 |
Protein Assay Dye Reagent Concentrate | Bio-Rad | Cat#5000006 |
Dimethylsulphoxide (DMSO) | Sigma-Aldrich | Cat#D2650 |
Paraformaldehyde | Sigma-Aldrich | Cat#30525-89-4 |
Experimental Models: Cell Lines | ||
HEK293 cells | ATCC | Cat#300192/p777_HEK293; RRID:CVCL_0045 |
Experimental Models: Organisms/Strains | ||
DBA2 | Charles River | N/A |
C57BL/6 | Charles River | N/A |
B6D2F1 (DBA2xC57BL/6) | Instituto de Neurociencias de Alicante, Spain | N/A |
Zic2kd/kd (B6.129S4-Zic2tm1Jaru/JaruRbrc Mus musculus) | RIKEN Repository | IMSR Cat#RBRC00165; RRID:IMSR_RBRC00165 |
Unc5crcm(B6C3Fe a/a-Unc5crcm/J Mus musculus) | Jackson Laboratories | IMSR Cat#JAX:001607; RRID:IMSR_JAX:001607 |
Pigmented ferrets (Mustela putorius furo) | Euroferret | N/A |
Danio Renio (strain AB) | Instituto de Neurociencias de Alicante, Spain | N/A |
Gallus gallus, fertilized chicken eggs | Granja Santa Isabel (Córdoba, Spain) | http://www.granjasantaisabel.com; Cat#800008 |
Oligonucleotides | ||
shRNA primer1: 5′-GATCCGAACCACCGTGACTTTGAGTT CAAGAGACTCAAAGTCACGGTGGTTCTTTTTTGGAA-3′ |
This paper | N/A |
shRNA primer 2: 5′-AGCTTTTCCAAAAAAGAACCACCGTG ACTTTGAGTCTCTTGAACTCAAAGTCACGGTGGTTCG-3′. |
This paper | N/A |
mUnc5c primer 1: 5′-CGGCCCCGAAGAATGGAGGC-3′ | This paper | N/A |
mUnc5c primer 2: 5′-GGTCAGCACAACGGGTCGGG-3′ | This paper | N/A |
zUnc5c primer 1: 5′-GACACGCAGGACGCACTCAAG-3′ | This paper | N/A |
zUnc5c primer 2: 5′-CCCACAGGTCCAGGATCACTC-5 | This paper | N/A |
cUnc5c primer 1: 5′-CGGCCCCGAAGAATGGAGGC-3′ | This paper | N/A |
cUnc5c primer 2: 5′-GGTCAGCACAACGGGTCGGG-3′ | This paper | N/A |
Recombinant DNA | ||
mNetrin-1 pBluescript | Gift from Prof. Orly RinerW (Weizmann Institute of Science, Israel) | N/A |
pCAG-mUnc5c-IresEGFP | This paper | NC_0000069.6 |
TOPO plasmid | Thermo Fisher Scientific | Cat#451641 |
pCAG-GFP | This lab (previous study [59]) | N/A |
pSilencer2.1 | Thermo Fisher Scientific | Cat#AM5760M |
Software and Algorithms | ||
IMARIS 9.2.1 | Bitplane, Zurich, Switzerland | http://www.bitplane.com |
Fiji | ImageJ | https://fiji.sc |
MATLAB | MathWorks | https://www.mathworks.com; https://github.com/SalvadorSala/SOM |
Other | ||
DAPI staining | Sigma-Aldrich | Cat#10236276001 |
DiI crystals | Thermo Fisher Scientific | Cat#D3911 |