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. 2019 Apr 1;29(7):1149–1160.e4. doi: 10.1016/j.cub.2019.02.052
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse monoclonal antibody anti-β-actin (1:10000 for WB) Sigma-Aldrich Cat#A5441; RRID:AB_476744
Goat polyclonal antibody anti-DCC (A-20) (1:100 for WB) Santa Cruz Cat#sc-6535; RRID:AB_2245770
Rabbit anti-human Unc5c polyclonal antibody (1:500 for WB) Abcam Cat#ab91408; RRID:AB_2212873
Chicken polyclonal antibody anti-GFP (1:2000 for IF) Aves Labs Cat#GFP-1020; RRID:AB_10000240
Rabbit polyclonal antibody anti-Zic2 (1:1000 for IF) This lab (previous study [55, 56, 57, 58]) N/A
Mouse neuron class III β-Tubulin monoclonal antibody (anti-Tuj1) (1:1000 for IF) Covance Cat#MMS-435P; RRID:AB_2313773
Rabbit specific beta III tubulin antibody (1:1000 for IF) Abcam Cat#ab18207; RRID:AB_444319
Mouse monoclonal antibody anti-Brn3a (1:300 for IF) Millipore Cat#MAB1585; RRID:AB_94166
Rabbit polyclonal antibody anti-calbindin D-28k (1:1000 for IF) Swant Cat#CB38; RRID:AB_2721225
Goat polyclonal antibody anti-ChAT (1:100 for IF) Millipore Cat#AB144P; RRID:AB_2079751
Mouse monoclonal antibody anti-Isl1/2 (39.4D5) (1:500 for IF) Hybridoma Bank Cat#39.4D5; RRID:AB_2314683

Bacterial and Virus Strains

pAAV-CAG-tdTomato Addgene Cat#59462-AAV5

Chemicals, Peptides, and Recombinant Proteins

Cholera toxin B subunit (CTB)-Alexa 594 ThermoFisher Cat#C22842
Cholera toxin B subunit (CTB)-Alexa 488 ThermoFisher Cat#C34775
Cholera toxin B subunit (CTB)-Alexa 647 ThermoFisher Cat#C34778
TEMED Sigma-Aldrich Cat#T9281
Acrylamide solution Sigma-Aldrich Cat#A4058
Lipofectamine 2000 Thermo Fisher Scientific Cat#11668019
Pencillin/Streptomycin Sigma-Aldrich Cat#P0781
cOmplete Mini EDTA-free protease inhibitor cocktail tablets Sigma-Aldrich Cat#11836170001
IGEPAL CA-630 Sigma-Aldrich Cat#I8896
Laemmliś buffer Sigma-Aldrich Cat#S3401
Protein Assay Dye Reagent Concentrate Bio-Rad Cat#5000006
Dimethylsulphoxide (DMSO) Sigma-Aldrich Cat#D2650
Paraformaldehyde Sigma-Aldrich Cat#30525-89-4

Experimental Models: Cell Lines

HEK293 cells ATCC Cat#300192/p777_HEK293; RRID:CVCL_0045

Experimental Models: Organisms/Strains

DBA2 Charles River N/A
C57BL/6 Charles River N/A
B6D2F1 (DBA2xC57BL/6) Instituto de Neurociencias de Alicante, Spain N/A
Zic2kd/kd (B6.129S4-Zic2tm1Jaru/JaruRbrc Mus musculus) RIKEN Repository IMSR Cat#RBRC00165; RRID:IMSR_RBRC00165
Unc5crcm(B6C3Fe a/a-Unc5crcm/J Mus musculus) Jackson Laboratories IMSR Cat#JAX:001607; RRID:IMSR_JAX:001607
Pigmented ferrets (Mustela putorius furo) Euroferret N/A
Danio Renio (strain AB) Instituto de Neurociencias de Alicante, Spain N/A
Gallus gallus, fertilized chicken eggs Granja Santa Isabel (Córdoba, Spain) http://www.granjasantaisabel.com; Cat#800008

Oligonucleotides

shRNA primer1: 5′-GATCCGAACCACCGTGACTTTGAGTT
CAAGAGACTCAAAGTCACGGTGGTTCTTTTTTGGAA-3′
This paper N/A
shRNA primer 2: 5′-AGCTTTTCCAAAAAAGAACCACCGTG
ACTTTGAGTCTCTTGAACTCAAAGTCACGGTGGTTCG-3′.
This paper N/A
mUnc5c primer 1: 5′-CGGCCCCGAAGAATGGAGGC-3′ This paper N/A
mUnc5c primer 2: 5′-GGTCAGCACAACGGGTCGGG-3′ This paper N/A
zUnc5c primer 1: 5′-GACACGCAGGACGCACTCAAG-3′ This paper N/A
zUnc5c primer 2: 5′-CCCACAGGTCCAGGATCACTC-5 This paper N/A
cUnc5c primer 1: 5′-CGGCCCCGAAGAATGGAGGC-3′ This paper N/A
cUnc5c primer 2: 5′-GGTCAGCACAACGGGTCGGG-3′ This paper N/A

Recombinant DNA

mNetrin-1 pBluescript Gift from Prof. Orly RinerW (Weizmann Institute of Science, Israel) N/A
pCAG-mUnc5c-IresEGFP This paper NC_0000069.6
TOPO plasmid Thermo Fisher Scientific Cat#451641
pCAG-GFP This lab (previous study [59]) N/A
pSilencer2.1 Thermo Fisher Scientific Cat#AM5760M

Software and Algorithms

IMARIS 9.2.1 Bitplane, Zurich, Switzerland http://www.bitplane.com
Fiji ImageJ https://fiji.sc
MATLAB MathWorks https://www.mathworks.com; https://github.com/SalvadorSala/SOM

Other

DAPI staining Sigma-Aldrich Cat#10236276001
DiI crystals Thermo Fisher Scientific Cat#D3911