Table 1.
SNP | Locus | Chr | Position | Gene | Alleles | EAF | Betaa ± SE | P value | I 2 | |
---|---|---|---|---|---|---|---|---|---|---|
Effect | Noneffect | |||||||||
Novel loci | ||||||||||
rs74896528 | 1p35.3 | 1 | 28598287 | SESN2 | T | C | 0.057 | −0.057 ± 0.010 | 8.42 × 10−9 | 0 |
rs10188118 | 2p25.3 | 2 | 653623 | LOC105373352, TMEM18 | C | G | 0.864 | 0.035 ± 0.006 | 8.60 × 10−9 | 48.7 |
rs6774054 | 3q25.1 | 3 | 149211699 | TM4SF4 | A | G | 0.337 | 0.024 ± 0.004 | 1.58 × 10−8 | 0 |
rs11952102 | 5q35.3 | 5 | 176740704 | MXD3, LMAN2 | A | G | 0.448 | 0.022 ± 0.004 | 4.24 × 10−8 | 0 |
rs16898823 | 6p21.33 | 6 | 31106606 | PSORS1C1, PSORS1C2 | A | T | 0.900 | 0.037 ± 0.007 | 2.55 × 10−8 | 0 |
rs8024067 | 15q26.1 | 15 | 93439224 | LINC01578 | T | G | 0.158 | −0.034 ± 0.006 | 8.41 × 10−9 | 40.9 |
rs6031598 | 20q13.12 | 20 | 43056149 | HNF4A | T | G | 0.378 | −0.023 ± 0.004 | 2.90 × 10−8 | 27.5 |
rs2281293 | 22q13.31 | 22 | 44334842 | PNPLA3 | T | C | 0.559 | 0.024 ± 0.004 | 4.99 × 10−9 | 0 |
Loci also identified by BBJ 28 | ||||||||||
rs811372 | 2p15 | 2 | 61429568 | USP34 | T | C | 0.367 | 0.026 ± 0.004 | 7.97 × 10−10 | 4 |
rs10857147 | 4q21.21 | 4 | 81181072 | PRDM8, FGF5 | A | T | 0.699 | 0.032 ± 0.005 | 1.31 × 10−11 | 17.2 |
rs13230625 | 7p22.3 | 7 | 1286244 | UNCX, MICALL2 | A | G | 0.318 | 0.027 ± 0.004 | 4.82 × 10−10 | 0 |
rs7835379 | 8q22.1 | 8 | 95975080 | TP53INP1, NDUFAF6 | A | G | 0.755 | 0.032 ± 0.005 | 7.41 × 10−12 | 46.6 |
rs9416703 | 10q21.1 | 10 | 60283008 | BICC1 | A | C | 0.525 | −0.036 ± 0.004 | 1.70 × 10−18 | 0 |
rs11202346 | 10q23.2 | 10 | 88908912 | FAM35A | T | G | 0.225 | 0.035 ± 0.005 | 4.12 × 10−12 | 0 |
rs1886603 | 10q26.11 | 10 | 119482303 | EMX2, RAB11FIP2 | A | G | 0.374 | 0.027 ± 0.004 | 3.22 × 10−11 | 0 |
rs2220970 | 11p15.4 | 11 | 9857749 | SBF2 | A | G | 0.342 | 0.024 ± 0.004 | 1.12 × 10−8 | 0 |
rs963837 | 11p14.1 | 11 | 30749090 | MPPED2, DCDC1 | T | C | 0.656 | 0.028 ± 0.005 | 8.41 × 10−10 | 5.6 |
rs6026578 | 20q13.32 | 20 | 57463472 | LOC101927932 | C | G | 0.278 | 0.028 ± 0.005 | 5.48 × 10−10 | 0 |
Loci also identified by other studies | ||||||||||
rs1797052 | 1q21.1 | 1 | 145727683 | PDZK1 | T | C | 0.185 | 0.041 ± 0.005 | 2.57 × 10−15 | 0 |
rs4072037 | 1q22 | 1 | 155162067 | MUC1 | T | C | 0.828 | −0.048 ± 0.005 | 6.93 × 10−20 | 62.7 |
rs1260326 | 2p23.3 | 2 | 27730940 | GCKR | T | C | 0.559 | 0.036 ± 0.004 | 7.56 × 10−19 | 0 |
rs16856823 | 2q31.1 | 2 | 170200452 | LRP2 | A | T | 0.808 | −0.039 ± 0.005 | 6.61 × 10−14 | 0 |
rs6445559 | 3p21.1 | 3 | 53099466 | SFMBT1, RFT1 | A | G | 0.561 | 0.029 ± 0.004 | 2.53 × 10−12 | 2.6 |
rs7679724 | 4p16.1 | 4 | 9985376 | SLC2A9 | T | G | 0.586 | 0.130 ± 0.004 | 1.67 × 10−224 | 81.6 |
rs4148155 | 4q22.1 | 4 | 89054667 | ABCG2 | A | G | 0.705 | −0.115 ± 0.004 | 2.05 × 10−149 | 0 |
rs2762353 | 6p22.2 | 6 | 25794431 | SLC17A1 | A | G | 0.160 | −0.054 ± 0.005 | 8.68 × 10−24 | 11.5 |
rs9394948 | 6p21.1 | 6 | 43334755 | ZNF318 | A | C | 0.341 | 0.032 ± 0.004 | 1.65 × 10−13 | 9 |
rs17145750 | 7q11.23 | 7 | 73026378 | MLXIPL | T | C | 0.102 | −0.038 ± 0.007 | 5.85 × 10−9 | 0 |
rs1828911 | 8q21.11 | 8 | 76462547 | HNF4G | T | C | 0.575 | −0.038 ± 0.004 | 8.08 × 10−21 | 0 |
rs57633992 | 11q13.1 | 11 | 64424967 | NRXN2 | A | C | 0.054 | −0.668 ± 0.010 | <1 × 10−300 | 68.8 |
rs79105258 | 12q24.12 | 12 | 111718231 | CUX2 | A | C | 0.254 | −0.078 ± 0.005 | 1.91 × 10−56 | 0 |
rs73436803 | 15q24.2 | 15 | 75619201 | GOLGA6D, COMMD4 | T | C | 0.099 | −0.043 ± 0.008 | 1.38 × 10−8 | 0 |
rs4966024 | 15q26.3 | 15 | 99295570 | IGF1R | A | G | 0.486 | −0.033 ± 0.004 | 4.43 × 10−16 | 0 |
rs244423 | 16q22.1 | 16 | 69610002 | NFAT5 | A | G | 0.156 | 0.035 ± 0.006 | 2.00 × 10−10 | 40.5 |
rs73575095 | 16q23.2 | 16 | 79750332 | MAF, MAFTRR | T | C | 0.719 | 0.035 ± 0.005 | 4.03 × 10−15 | 0 |
rs9895661 | 17q23.2 | 17 | 59456589 | BCAS3 | T | C | 0.475 | 0.044 ± 0.005 | 9.20 × 10−23 | 0 |
Chr chromosome, SUA serum uric acid
aThe beta value represents change in z-score per effect allele copy for the SNP