Table 1.
Overall assembly statistics
| Amel_4.5 | 10 × a | PacBio | Amel_HAv1c | Amel_HAv2d | Amel_HAv3e | ||
|---|---|---|---|---|---|---|---|
| Size | Total (Mbp) | 229.12 | 217.80 | 223.24 | 225.21 | 225.23 | 223.86 |
| Contigs (all) | N | 16,501 | 20,240 | 429 | 330 | 331 | 228 |
| Longest (Mbp) | 0.333 | 0.288 | 9.726 | 13.399 | 13.399 | 13.400 | |
| Mean (Mbp) | 0.014 | 0.011 | 0.520 | 0.682 | 0.684 | 0.974 | |
| N50 (Mbp) | 0.046 | 0.031 | 3.086 | 5.167 | 5.167 | 5.381 | |
| L50 (n) | 1390 | 1968 | 23 | 14 | 14 | 13 | |
| Scaffolds (all)b | N | 5644 | 9734 | – | – | 280 | 177 |
| Longest (Mbp) | 4.736 | 3.297 | – | – | 27.79 | 27.77 | |
| Mean (Mbp) | 0.041 | 0.024 | – | – | 0.816 | 3.340 | |
| N50 (Mbp) | 0.997 | 0.589 | – | – | 11.33 | 13.62 | |
| L50 (n) | 65 | 116 | – | – | 8 | 7 | |
| Scaffolds (anchored to nuclear chr.) | N | 340 | – | – | – | 36 | 16 |
| Longest (Mbp) | 4.736 | – | – | – | 27.79 | 27.77 | |
| Mean (Mbp) | 0.598 | – | – | – | 6.21 | 13.79 | |
| N50 (Mbp) | 1.209 | – | – | – | 11.60 | 13.62 | |
| L50 (n) | 52 | – | – | – | 7 | 7 | |
aLinked-read sequences taken as scaffolds. Contigs derived from splitting scaffolds on Ns
bIndividual unplaced fragments counted as scaffolds
cPacBio+10x
dPacBio+10x + BioNano
ePacBio+10x + BioNano+Hi-C