Table 5.
GO pathway enrichment analysis to the target mRNA genes of DEM between each two samples from Bud, sL1, sL2, sS1, and sS2.
| Characteristic pathway | Metabolic pathway | Annotated genes | Related mRNA | miRNA |
|---|---|---|---|---|
| Flavonoid pathway | Phenylalanine metabolism | Amidase | CSA014307 | miR8577-x |
| Omega-amidase | CSA016772 | novel-m0263-3p | ||
| Phenylpropanoid biosynthesis | Cinnamyl-alcohol dehydrogenase (CAD) | CSA019604 | novel-m0018-3p, novel-m0119-3p, novel-m0279-3p, novel-m0498-3p, novel-m0608-3p, novel-m0674-3p, novel-m0888-3p, novel-m0904-5p, novel-m0977-3p, novel-m1032-3p, novel-m1080-3p, novel-m1106-3p | |
| CSA005610 | miR1511-y, miR5139-x, miR8155-y, novel-m0999-3p | |||
| CSA009196 | miR6118-y | |||
| Peroxidase | CSA026001 | miR5658-x, novel-m0675-3p | ||
| Beta-glucosidase | CSA014637 | novel-m0349-3p, novel-m0360-3p, novel-m0428-3p | ||
| Shikimate O-hydroxycinnamoyltransferase (SHT) | CSA011696 | miR8577-x | ||
| Flavonoid biosynthesis | Naringenin 3-dioxygenase (F3H) | CSA004930 | miR8577-x | |
| Chalcone isomerase (CHI) | CSA006623 | novel-m0466-3p, novel-m0809-3p | ||
| Anthocyanin biosynthesis | Anthocyanidin 3-O-glucoside 5-O-glucosyltransferase (UGT75C1) | CSA036671 | miR1865-x, novel-m0674-3p, novel-m1032-3p | |
| UGAT | CSA013643 | miR4995-x, miR6483-y | ||
| Caffeine Pathway | Caffeine Metabolism | Urate oxidase (UOX) | CSA020658 | novel-m0021-5p, novel-m0508-3p, novel-m0698-3p, novel-m0834-3p, novel-m0964-3p, novel-m0964-3p |
| Xanthine dehydrogenase/oxidase | CSA006612 | miR5059-x | ||
| Amino acid Pathway | Citrate cycle (TCA cycle) | Isocitrate dehydrogenase (NAD+) | CSA018911 | miR5083-y |
| Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) | CSA034852 | miR8175-y | ||
| 2-oxoglutarate dehydrogenase E1 component | CSA032631 | novel-m0381-3p | ||
| 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) | CSA019997 | novel-m0184-5p | ||
| ATP citrate (pro-S)-lyase | CSA033096 CSA027464 CSA034373 | miR5059-x | ||
| Succinyl-CoA synthetase beta subunit | CSA027414 | novel-m0018-3p, novel-m0119-3p, novel-m0279-3p, novel-m0498-3p, novel-m0608-3p, novel-m0674-3p, novel-m0888-3p, novel-m0904-5p, novel-m0977-3p, novel-m1032-3p, novel-m1080-3p, novel-m1106-3p | ||
| Aconitate hydratase | CSA024268 CSA025056 CSA020729 | novel-m0945-3p | ||
| Fumarate hydratase, class II | CSA004158 | novel-m0574-5p | ||
| CSA036624 | miR5054-y | |||
| Succinyl-CoA synthetase beta subunit | CSA027414 | novel-m0018-3p, novel-m0119-3p, novel-m0279-3p, novel-m0498-3p, novel-m0608-3p, novel-m0674-3p, novel-m0888-3p, novel-m0904-5p, novel-m0977-3p, novel-m1032-3p, novel-m1080-3p, novel-m1106-3p | ||
| Alanine, aspartate and glutamate metabolism | Glutamate dehydrogenase (NAD(P)+) | CSA030852 CSA002178 CSA019055 | novel-m0541-3p | |
| Alanine transaminase | CSA034511 | novel-m0410-3p, novel-m0435-3p, novel-m0549-3p, novel-m0553-5p, novel-m0554-5p, novel-m0752-5p, novel-m0769-3p, novel-m0863-3p, novel-m0938-3p, novel-m1097-3p, novel-m1123-5p | ||
| 4-aminobutyrate—pyruvate transaminase | CSA023854 | novel-m0074-3p, novel-m0075-3p | ||
| Calcium-binding protein CML | CSA036463 | novel-m1108-5p | ||
| CSA009111 | ||||
| Amidophosphoribosyl transferase | CSA032114 | miR5059-x, miR6281-x | ||
| 3-deoxy-7-phosphoheptulonate synthase | CSA021087 | novel-m1042-3p | ||
| CSA011007 | novel-m0657-3p, novel-m1042-3p | |||
| Arogenate/prephenate dehydratase | CSA006958 | miR5054-y, novel-m0388-3p |