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. 2019 Apr 9;17(4):e3000191. doi: 10.1371/journal.pbio.3000191

Table 1. Accumulated somatic mutations per sample in each terminal branch of all sequenced plant samples.

Species
(reference genome size)
Samples Diameter of the trunk (cm) Estimated age (years) DNA source Sequenced samples Accumulated mutations
Average observed Normalized rate (× 10−9 per bp per year)a
P. mira
(225 Mb)
G1b 207 600 Leaf 32 12.7 0.08
G2 191 550 Leaf 12 23.9 0.15
GL2 148 420 Leaf 23 17.7 0.14
GZ 110 300 Leaf 9 12.8 0.15
P. persica
(225 Mb)
PXLc 11.1 21 Leaf 23 3.74 0.52
Rootd 13 29.8 4.06
HY2 14 25 Leaf 16 6.19 0.62
Petal 13 11.31 1.13
NJAU1 15.9 30 Leaf 26 6.46 0.56
NJAU2 37.6 50 Leaf 8 6.25 0.40
Maoping 12.8 40 Leaf 16 3.56 0.26
DHQ1 3.1 2 Leaf 75 1.97 2.54
P. mume
(220 Mb)
MHG1 17.5 20 Leaf 25 12.9 2.17
Rootd 32 25.4 4.82
MHG2 10.2 8 Leaf 33 5.7 2.38
S. suchowensis
(480 Mb)
YAF1 - 1 Leaf 19 1.26 2.58
Rootd 21 2.86 6.60
B. distachyon
(272 Mb)
WD2 - 1 Leaf 29 3.17 6.13
Rootd 8 4.75 8.97
Lemma 7 2.57 4.97
Fragaria vesca
(210 Mb)
FH1 - 1 Leaf 45 1.93 6.37
Stemse 4 4.75 15.78
Arabidopsis thaliana
(119 Mb)
Col17+Col24 - 1 Leaf 64 0.69 4.35
Oryza sativa
(373 Mb)
KA1+PA1+ DG1+NIPB - 1 Leaf (Tiller)f 29 4.79 9.01
Leaf (Callus) 13 194.8 287.1

aMutation rate per bp per year corrected for accessible genome regions.

bThe age of G1 was estimated to be at least 600 years old by comparing with another about 900-year-old peach tree whose diameter is about 240 cm, and this tree is only a few kilometers away from G1.

cThe age of the PXL peach tree was estimated to be about 21 years old through counting its annual ring in 2016.

dThese four samples contain both leaves from different trunk branches and roots from different underground root branches; in samples of tree roots, DNA was extracted from the phloem of the root.

eIn these strawberry samples, four runner regions in the same vine were chosen for sequencing (see Fig 3B for details).

fTiller samples from culture-derived plants were not included.