Table 1.
The 15 cancer types and their KEGG and TCGA IDs as well as the number of TCGA data sets.
| Cancer type | KEGG ID | KEGG cancer type | TCGA cancer type | TCGA sample size | |
|---|---|---|---|---|---|
| Cancer | Normal | ||||
| BLCA | hsa05219 | Bladder cancer | Bladder urothelial carcinoma | 408 | 19 |
| BRCA | hsa05224 | Breast cancer | Breast invasive carcinoma | 1094 | 112 |
| COAD | hsa05210 | Colorectal cancer | Colon adenocarcinoma | 284 | 40 |
| KIRC | hsa05211 | Renal cell carcinoma | Kidney renal clear cell carcinoma | 533 | 72 |
| KIRP | hsa05211 | Renal cell carcinoma | Kidney renal papillary cell carcinoma | 290 | 32 |
| LGG | hsa05214 | Glioma | Brain lower grade glioma | 515 | 0 |
| LIHC | hsa05225 | Hepatocellular carcinoma | Liver hepatocellular carcinoma | 371 | 50 |
| LUAD | hsa05223 | Non-small-cell lung cancer | Lung adenocarcinoma | 515 | 59 |
| LUSC | hsa05223 | Non-small-cell lung cancer | Lung squamous cell carcinoma | 502 | 50 |
| PAAD | hsa05212 | Pancreatic cancer | Pancreatic adenocarcinoma | 178 | 3 |
| PRAD | hsa05215 | Prostate cancer | Prostate adenocarcinoma | 496 | 51 |
| SKCM | hsa05218 | Melanoma | Skin cutaneous melanoma | 102 | 0 |
| STAD | hsa05226 | Gastric cancer | Stomach adenocarcinoma | 415 | 35 |
| THCA | hsa05216 | Thyroid cancer | Thyroid carcinoma | 504 | 59 |
| UCEC | hsa05213 | Endometrial cancer | Uterine corpus endometrial carcinoma | 176 | 23 |
Abbreviations: BLCA, bladder carcinoma; BRCA, breast cancer; COAD, colon adenocarcinoma; KEGG, Kyoto Encyclopedia of Genes and Genomes;KIRC, kidney renal clear cell carcinoma; KIRP, kidney renal papillary cell carcinoma; LGG, lower grade glioma; LIHC, liver hepatocellular carcinoma; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; PAAD, pancreatic adenocarcinoma; PRAD: prostate adenocarcinoma; SKCM, skin cutaneous melanoma; STAD, stomach adenocarcinoma; TCGA: The Cancer Genome Atlas; THCA, thyroid cancer; UCEC, uterine corpus endometrial carcinoma.