Table 2.
Performance of different methods in terms of auROC scores
| Methods | H3K4me1 | H3K4me3 | H3K27me3 | H3K36me3 | H3K9me3 | H3K9ac | H3K27ac |
|---|---|---|---|---|---|---|---|
| DeepHistone (Standard) | 0.9065 (0.0292) | 0.9459 (0.0404) | 0.8896 (0.0292) | 0.8890 (0.0174) | 0.8969 (0.0340) | 0.9039 (0.0331) | 0.9137 (0.0242) |
| DeepHistone (DNA-only) | 0.8685 (0.0550) | 0.9381 (0.0595) | 0.8766 (0.0635) | 0.8834 (0.0447) | 0.8744 (0.0535) | 0.8900 (0.1013) | 0.8834 (0.0605) |
| DeepHistone (DNase-only) | 0.8335 (0.0304) | 0.8627 (0.0257) | 0.7132 (0.0319) | 0.7080 (0.0245) | 0.7639 (0.0354) | 0.8353 (0.0596) | 0.8690 (0.0361) |
| DeepSEA | 0.7828 (0.0276) | 0.8987 (0.0269) | 0.7829 (0.0296) | 0.8167 (0.0200) | 0.8341 (0.0306) | 0.8330 (0.0620) | 0.7934 (0.0335) |
| DanQ | 0.7649 (0.0258) | 0.8934 (0.0367) | 0.7722 (0.0266) | 0.8138 (0.0191) | 0.8272 (0.0336) | 0.8238 (0.0353) | 0.7726 (0.0241) |
| gkm-SVM | 0.6361 (0.0399) | 0.8092 (0.0592) | 0.6434 (0.0415) | 0.6666 (0.0335) | 0.7278 (0.0421) | 0.7167 (0.0454) | 0.6445 (0.0367) |
Numbers in a cell are the mean (left) and standard deviation (right) of auROC scores over the 15 epigenomes