Table 1.
SNP identification and selection in the 13 durum wheat cultivars
| Number | Percent | |
|---|---|---|
| a. SNPs | ||
| Simple SNPs | 33,747 | 4.52% |
| Hemi-SNPs | 497,783 | 66.62% |
| Inter-homoeolog SNPs | 110,876 | 14.84% |
| SNPs with more than two genotypes | 95,358 | 12.76% |
| Assembly discordant SNPs | 9400 | 1.26% |
| Total SNPs computed | 747,164 | |
| b. Selected SNPs | ||
| Hemi-SNPs | 4461 | 56.18% |
| Simple SNPs | 3479 | 43.83% |
| Selected SNPs for the wheat chip | 7940 | |
Panel (a) reports the overall SNPs computed, divided in different categories. Panel (b) reports the SNPs selected for the wheat chip with classification between simple and hemi-SNP