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. 2019 Mar 27;75(Pt 2):235–245. doi: 10.1107/S2052520619002002

Table 6. Molecular geometry (Å, °) of N1-substituted isocytosine.

  REFMAC CSD QM for iC QM for iCiG
N1—C2 1.410 1.352 (3) 1.380 1.385
C2—N3 1.350 1.332 (2) 1.295 1.324
N3—C4 1.350 1.364 (2) 1.393 1.375
C4—C5 1.390 1.445 (3) 1.467 1.461
C5—C6 1.390 1.340 (3) 1.338 1.350
C6—N1 1.337 1.357 (3) 1.383 1.382
C2—N2 1.355 1.324 (3) 1.363 1.340
C4—O4 1.250 1.247 (2) 1.220 1.244
C6—N1—C2 120.0 120.23 (16) 117.05 118.2
N1—C2—N3 120.0 122.00 (18) 124.67 122.2
C2—N3—C4 120.0 119.65 (16) 120.86 121.7
N3—C4—C5 120.0 118.94 (15) 115.97 117.3
C4—C5—C6 120.0 118.40 (20) 120.10 119.0
C5—C6—N1 120.0 120.77 (18) 121.35 121.7
N2—C2—N1 120.0 118.74 (16) 116.78 118.8
N2—C2—N3 120.0 119.24 (18) 118.55 119.0
O4—C4—C5 120.0 121.69 (17) 122.29 121.9
O4—C4—N3 120.0 119.35 (17) 121.75 120.8
RMSD versus QM for iC (d/a) 0.0176/1.294

ICYTIN01; N1-protonation.

Suggested standard deviations 0.009 Å for bonds, 0.7° for angles.