Table 6. Molecular geometry (Å, °) of N1-substituted isocytosine.
REFMAC | CSD† | QM for iC | QM for iCiG‡ | |
---|---|---|---|---|
N1—C2 | 1.410 | 1.352 (3) | 1.380 | 1.385 |
C2—N3 | 1.350 | 1.332 (2) | 1.295 | 1.324 |
N3—C4 | 1.350 | 1.364 (2) | 1.393 | 1.375 |
C4—C5 | 1.390 | 1.445 (3) | 1.467 | 1.461 |
C5—C6 | 1.390 | 1.340 (3) | 1.338 | 1.350 |
C6—N1 | 1.337 | 1.357 (3) | 1.383 | 1.382 |
C2—N2 | 1.355 | 1.324 (3) | 1.363 | 1.340 |
C4—O4 | 1.250 | 1.247 (2) | 1.220 | 1.244 |
C6—N1—C2 | 120.0 | 120.23 (16) | 117.05 | 118.2 |
N1—C2—N3 | 120.0 | 122.00 (18) | 124.67 | 122.2 |
C2—N3—C4 | 120.0 | 119.65 (16) | 120.86 | 121.7 |
N3—C4—C5 | 120.0 | 118.94 (15) | 115.97 | 117.3 |
C4—C5—C6 | 120.0 | 118.40 (20) | 120.10 | 119.0 |
C5—C6—N1 | 120.0 | 120.77 (18) | 121.35 | 121.7 |
N2—C2—N1 | 120.0 | 118.74 (16) | 116.78 | 118.8 |
N2—C2—N3 | 120.0 | 119.24 (18) | 118.55 | 119.0 |
O4—C4—C5 | 120.0 | 121.69 (17) | 122.29 | 121.9 |
O4—C4—N3 | 120.0 | 119.35 (17) | 121.75 | 120.8 |
RMSD versus QM for iC (d/a) | 0.0176/1.294 |
ICYTIN01; N1-protonation.
Suggested standard deviations 0.009 Å for bonds, 0.7° for angles.