Table 5. Summary of features which have a significant association with sensitivity or resistance to autologous plasma or bN-mAb neutralization of EN1 viruses.
Feature in authentic sequences | Response to autologous plasma | EN1 plasma | Feature present in inferred sequences | Response to bN-mAb | bN-mAbs (P value) | |||||
---|---|---|---|---|---|---|---|---|---|---|
AN1 | AN2 | PG9 | PG16 | PGT121 | PGT128 | VRC01 | ||||
+V2 insertion | Resistant | <0.0001 | - | + | Resistant | 0.0006 | 0.0043 | 0.0001 | 0.3132 | 0.1512 |
+N444 | Resistant | 0.0035 | - | - | Resistant | 0.0287 | 0.0503 | 0.0298 | 0.1129 | 0.0944 |
+N402 | Sensitive | 0.0017 | - | - | Sensitive | 0.0025 | 0.0104 | 0.0087 | 0.4974 | 0.3094 |
+N130 | Resistant | 0.0290 | - | + | Resistant | 0.0068 | <0.0001 | 0.1338 | 0.5622 | 0.9718 |
+N339 | Sensitive | 0.0007 | - | - | Sensitive | 0.0375 | 0.0010 | 0.1079 | 0.9447 | >0.9999 |
+N337 | Resistant | 0.0290 | + | + | Resistant | 0.2284 | 0.0196 | 0.5572 | 0.6360 | 0.5945 |
+N137 | None | 0.0720 | - | + | Sensitive | 0.0690 | 0.1554 | 0.0172 | 0.1180 | 0.6011 |
+N295 | Sensitive | 0.0392 | - | - | None | 0.4160 | 0.1041 | 0.6617 | 0.4665 | 0.4215 |
+N413 | Sensitive | 0.0353 | + | + | None | 0.6057 | 0.1291 | 0.4308 | 0.1180 | 0.9169 |
PNGS features have HXB2 numbering. The associated response (sensitive, resistant or none) to each feature by autologous plasma or bN-mAbs was calculated by comparing the mean neutralization titers of viruses exhibiting the sequence feature to viruses that did not have the sequence feature (Mann-Whitney U-test (p = <0.05). Statistically significant responses are indicated by P values in bold.