Table 3.

Prokaryote and fungal OTUs showing strong preferences for host states in the soil microbiome datasets. The prokaryote/fungal OTUs that showed strong preferences for ‘green’ or ‘no leaf’ soybean individuals (preference value ≥ 3) are shown. The taxonomic assignment results based on the QCauto–LCA pipeline are shown with the top-hit results of NCBI BLAST searches. The OTU code starting with P (P_xxxx) and F (F_xxxx) are prokaryotes and fungi, respectively.

OTU	phylum	class	order	family	genus	NCBI top hit	accession	cover (%)	Identity (%)
green
P_0697	Actinobacteria	—	—	—	—	Gaiella occulta	NR_118138.1	100	91
P_1264	Chloroflexi	Thermomicrobia	Sphaerobacterales	Sphaerobacteraceae	Sphaerobacter	Shewanella fodinae	FM887036.1	98	84
P_1281	Chloroflexi	Thermomicrobia	—	—	—	Thermomicrobium carboxidum	NR_134218.1	100	87
P_2949	Proteobacteria	Deltaproteobacteria	Myxococcales	Kofleriaceae	Haliangium	Kofleria flava	HF937255.1	100	91
P_3762	—	—	—	—	—	Planctomycetales bacterium	AY673390.1	98	94
P_3715	—	—	—	—	—	Brochothrix thermosphacta	MG807446.1	99	86
P_0032	—	—	—	—	—	Nitrosocosmicus exaquare	CP017922.1	100	99
F_0477	Ascomycota	—	—	—	—	No significant match	—	—	—
F_0141	Ascomycota	Eurotiomycetes	—	—	—	Penicillium clavigerum	NR_121317.1	100	81
F_0700	Basidiomycota	Tremellomycetes	Filobasidiales	Piskurozymaceae	Solicoccozyma	Solicoccozyma terreus	KY102958.1	100	100
F_0734	Basidiomycota	Tremellomycetes	Tremellales	Trimorphomycetaceae	Saitozyma	Saitozyma podzolica	KY102943.1	82	99
F_0738	Basidiomycota	Tremellomycetes	Tremellales	Trimorphomycetaceae	Saitozyma	Saitozyma podzolica	KY102943.1	84	99
no leaf
P_3294	Proteobacteria	Gammaproteobacteria	Pseudomonadales	Pseudomonadaceae	Pseudomonas	Pseudomonas psychrotolerans	KY623077.1	100	100
P_3256	Proteobacteria	Gammaproteobacteria	Nevskiales	Sinobacteraceae	Nevskia	Nevskia persephonica	JQ710442.1	97	99
P_3189	Proteobacteria	Gammaproteobacteria	Cellvibrionales	Cellvibrionaceae	Cellvibrio	Cellvibrio mixtus	KC329916.1	100	100
P_3308	Proteobacteria	Gammaproteobacteria	—	—	—	Steroidobacter sp.	KP185148.1	100	95
P_3093	Proteobacteria	Deltaproteobacteria	Myxococcales	—	—	Sorangiineae bacterium	JF719608.1	100	94
P_3004	Proteobacteria	Deltaproteobacteria	Myxococcales	Polyangiaceae	Byssovorax	Polyangium spumosum	KX572839.2	100	97
P_3114	Proteobacteria	Deltaproteobacteria	—	—	—	Stigmatella hybrida	KX572784.2	100	91
P_2747	Proteobacteria	Betaproteobacteria	Burkholderiales	Oxalobacteraceae	—	Massilia kyonggiensis	NR_126273.1	100	100
P_2827	Proteobacteria	Betaproteobacteria	—	—	—	Duganella radicis	LC191531.1	100	100
P_2552	Proteobacteria	Alphaproteobacteria	Sphingomonadales	Sphingomonadaceae	—	Novosphingobium sediminicola	KX987160.1	100	100
P_1637	Gemmatimonadetes	Gemmatimonadetes	Gemmatimonadales	Gemmatimonadaceae	Gemmatimonas	Gemmatimonas aurantiaca	KF228166.1	100	93
P_1544	Gemmatimonadetes	Gemmatimonadetes	Gemmatimonadales	Gemmatimonadaceae	Gemmatimonas	Gemmatimonas sp.	LN876485.1	100	89
P_0962	Bacteroidetes	Sphingobacteriia	Sphingobacteriales	Sphingobacteriaceae	Mucilaginibacter	Mucilaginibacter gotjawali	AP017313.1	100	99
P_0892	Bacteroidetes	Chitinophagia	Chitinophagales	Chitinophagaceae	—	Ferruginibacter profundus	NR_148259.1	100	88
P_1095	Bacteroidetes	—	—	—	—	Flavisolibacter ginsengisoli	NR_041500.1	100	95
P_1051	Bacteroidetes	—	—	—	—	Flavobacterium lindanitolerans	KP875419.1	100	100
P_1008	Bacteroidetes	—	—	—	—	Solitalea canadensis	CP003349.1	100	88
P_0652	Actinobacteria	Thermoleophilia	Solirubrobacterales	Solirubrobacteraceae	Solirubrobacter	Solirubrobacter phytolaccae	NR_133858.1	99	92
P_5169	—	—	—	—	—	Desulfotomaculum nigrificans	NR_074579.1	97	85
P_5087	—	—	—	—	—	Stenotrophobacter roseus	NR_146022.1	99	97
P_4649	—	—	—	—	—	Alkalilimnicola ehrlichii	NR_074775.1	99	81
P_4607	—	—	—	—	—	Verrucomicrobia	JF488114.1	100	92
P_4606	—	—	—	—	—	Ruminococcus flavefaciens	KX155563.1	99	83
P_4595	—	—	—	—	—	Moorella thermoacetica	NR_043076.1	97	84
P_3783	—	—	—	—	—	Fimbriimonas ginsengisoli	CP007139.1	100	88
P_3739	—	—	—	—	—	Solibacter usitatus	GQ287461.1	100	88
F_0866	Mucoromycota	Glomeromycetes	—	—	—	Acaulospora delicata	JF439203.1	45	95
F_0620	Basidiomycota	Agaricomycetes	Polyporales	—	Burgoa	Burgoa anomala	AB972783.1	100	100
F_0785	Basidiomycota	—	—	—	—	Radulomyces copelandii	MG722738.1	87	99
F_0257	Ascomycota	Sordariomycetes	Hypocreales	Bionectriaceae	Clonostachys	Clonostachys rosea	KY320599.1	100	100
F_0237	Ascomycota	Sordariomycetes	Glomerellales	Plectosphaerellaceae	—	Plectosphaerella plurivora	KU204617.1	98	99
F_0413	Ascomycota	Sordariomycetes	—	—	—	Xylariales sp.	KY031690.1	100	100
F_0163	Ascomycota	Orbiliomycetes	Orbiliales	Orbiliaceae	Dactylellina	Dactylellina aff. ellipsospora	KT215204.1	100	99
F_0131	Ascomycota	Eurotiomycetes	Eurotiales	—	—	Talaromyces verruculosus	KC937053.1	100	98
F_0003	Ascomycota	Dothideomycetes	Capnodiales	Cladosporiaceae	Cladosporium	Cladosporium cladosporioides	MG946764.1	100	100
F_0482	Ascomycota	—	—	—	—	Alternaria alternata	KY367499.2	100	100
F_0973	—	—	—	—	—	Peniophora incarnata	EU918698.1	100	98