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. 2019 Apr 10;5(4):e01455. doi: 10.1016/j.heliyon.2019.e01455

Table 1.

Estimates of evolutionary divergence between sequences.

Sequences 1 2 3 4 5 6 7 8 9 10 11
1 DENV2_IS1473_Seychelles_C1_2017 0,0000 0,0000 0,0000 0,0018 0,0023 0,0029 0,0031 0,0062 0,0062 0,0079
2 DENV2_IS1517_Seychelles_C1_2017 0,0000 0,0000 0,0000 0,0018 0,0023 0,0029 0,0031 0,0062 0,0062 0,0079
3 DENV2_IS1754155D_Seychelles_C1_2017 0,0000 0,0000 0,0000 0,0018 0,0023 0,0029 0,0031 0,0062 0,0062 0,0079
4 DENV2_ISIcilov_Seychelles_C1_2017 0,0000 0,0000 0,0000 0,0018 0,0023 0,0029 0,0031 0,0062 0,0062 0,0079
5 DENV2_MK570306_Jul_Run_C1_2018 0,0033 0,0033 0,0033 0,0033 0,0019 0,0033 0,0035 0,0062 0,0062 0,0080
6 DENV2_MK570307_Tom_Run_C1_2018 0,0044 0,0044 0,0044 0,0044 0,0033 0,0037 0,0037 0,0061 0,0061 0,0079
7 DNV2_JQ955624_India_C1_2011 0,0089 0,0089 0,0089 0,0089 0,0122 0,0133 0,0032 0,0062 0,0063 0,0077
8 DNV2_KF479233_China_India_C1_2013 0,0089 0,0089 0,0089 0,0089 0,0122 0,0133 0,0111 0,0062 0,0063 0,0079
9 DNV2_L10048_Seychelles_C1_1977 0,0388 0,0388 0,0388 0,0388 0,0421 0,0410 0,0399 0,0388 0,0019 0,0070
10 DNV2_L10047_Seychelles_C1_1977 0,0410 0,0410 0,0410 0,0410 0,0443 0,0432 0,0421 0,0410 0,0033 0,0071
11 DNV2_MG189962_Dar_es_Salaam_C2_2014 0,0642 0,0642 0,0642 0,0642 0,0676 0,0664 0,0642 0,0664 0,0554 0,0576

The number of base differences per site between sequences are shown. Standard error estimate(s) are shown above the diagonal. The rate variation among sites was modeled with a gamma distribution (shape parameter = 0.05). The analysis involved 11 nucleotide sequences. Codon positions included were 1st + 2nd + 3rd. All positions containing gaps and missing data were eliminated. There were a total of 903 positions in the final dataset. Evolutionary analyses were conducted in MEGA X [9].