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. 2019 Apr 11;12:220. doi: 10.1186/s13104-019-4256-6

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© The Author(s) 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Tuning number of threads and chunk sizes of OpenMP using simulated data. a Relative speedup with different number of threads. b Execution times (in seconds) for different scheduling strategies and chunk sizes. Number of threads was 16. Sequence lengths were set to 32,768 for both cases