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. Author manuscript; available in PMC: 2019 Apr 11.
Published in final edited form as: IEEE Trans Biomed Eng. 2018 Mar 8;65(12):2692–2703. doi: 10.1109/TBME.2018.2813759
Algorithm 1: LOCALIZATION([in] Ik (x) [out] ˆI(X)).
Input:(i)Ik(x)The intensity of the framekfor1kKin resolution-limited image.Output:I^(X)Estimated intensity in super-resolutionimage.1:forl=1:Ldoa.Fit a 3D Gaussian function toIk(x)usign leastsquares optimization based on Levenberg-Marquardtalgorithm, yielding the coordinatesxc,yc,zc.b.Find the uncertainty of the positionσx,σy,σzusing allKframes.c.Position mapping of the Gaussian-formed imageinto high resolution image usingIl(X)=A2πσxσyσzexp(((Xlxc)22σx2+(Ylyc)22σy2+(Zlzc)2σz2)).2:endfor3:Combine the single bubble high resolution imagesIl(X)for 1lLinto a composite image usingmaximum intensity projection method.