Table 3. Annotation of InDels detected in all sequenced Pakistani Bos indicus breeds.
| InDels | Count | Percentage |
|---|---|---|
| INTERGENIC | 769078 | 67.14% |
| INTRONIC | 349596 | 30.52% |
| DOWNSTREAM | 11370 | 0.99% |
| UPSTREAM | 9316 | 0.81% |
| UTR_3_PRIME | 2982 | 0.26% |
| EXONIC | 1079 | 0.09% |
| SPLICE_SITE_REGION | 850 | 0.07% |
| FRAMESHIFT_VARIANT | 602 | 0.05% |
| UTR_5_PRIME | 277 | 0.02% |
| SPLICE_SITE_ACCEPTOR | 101 | 0.01% |
| DISRUPTIVE_INFRAME_DELETION | 92 | 0.01% |
| DISRUPTIVE_INFRAME_INSERTION | 56 | 0.00% |
| CONSERVATIVE_INFRAME_INSERTION | 53 | 0.00% |
| CONSERVATIVE_INFRAME_DELETION | 50 | 0.00% |
| SPLICE_SITE_DONOR | 42 | 0.00% |
| STOP_GAINED (SG) | 11 | 0.00% |
| START_LOST (STL) | 9 | 0.00% |
| STOP_LOST (SL) | 2 | 0.00% |
| KNOWN | 592595 | |
| NOVEL | 491247 | |
| TOTAL | 1083842 |