Table 2. The six datasets shown in Fig 1D1–1D6.

For each we indicate whether it is an input or output.

#	Name	Identifier	Role	Description	Size
D1	DNase-seq	minid:b9dt2t	In	BDBag of 27 BDBags extracted from ENCODE by , one per tissue: 1,591 FASTQ files in all.	2.40 TB
D2	Alignment	minid:b9vx04	Out	BDBag of 54 BDBags produced by , 1 per {tissue, seed}: 386 BAM files in all.	5.30 TB
D3	Footprints	minid:b9496p	Out	BDBag of 54 BDBags containing footprints computed by , one per {tissue, seed}. Each BDBag contains two BED files per biosample, one per footprinting method.	0.04 TB
D4	Motifs	minid:b97957	In	Database dump file containing the non-redundant motifs provided by Funk et al. [13].	31.5 GB
D5	Hits	minid:b9p09p	Out	Database dump file containing the hits produced by .	0.04 TB
D6	TFBSs	minid:b9v398	Out	BDBag of 54 BDBags containing candidate TFBSs produced by , one per {tissue, seed}. Each BDBag contains two database dump files, one per footprinting method.	0.35 TB