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. 2019 Apr 11;9:5953. doi: 10.1038/s41598-019-42227-5

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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The many faces of HGT. The intra-niche HGT events occur between genomes occupying the same body site either in unique or mixed phylogenetic trees and involve either one-to-one (A), one-to-many (or many-to-one) (B), or many-to-many gene transfers (C). The inter-niche HGT events occur among genomes occupying different body sites and involve one-to-one (D), one-to-many (or many-to-one) (E), or many-to-many (F) transfers, as illustrated on the trees.