Table 1.

Upregulated proteins at all timepoints identified by proteomics.

				RNAseq				Proteomics
Uniprot ID	Locus	ID	Description	1 h	4 h	7 h		1 h	4 h	7 h
EFTU_LACPL	lp_2119	tuf	Elongation factor Tu	0.118	0.165	-0.03		0.24	0.01	0.36
F9UM10_LACPL	lp_0789	gapB	Glyceraldehyde-3-phosphate dehydrogenase	0.162	0.128	-0.16		0.38	0.42	0.43
F9UMJ6_LACPL	lp_1019	clpC	Protease	0.416	0.529	-0.28		0.32	0.06	0.02
F9UNI1_LACPL	lp_1437	ribA	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	-0.1	-0.16	0.067		0.07	0.03	0.07
F9UP39_LACPL	lp_1675	fabF	Lipid metabolism	-0.05	0.371	-0.56		0.21	0.11	1.97
F9UP45_LACPL	lp_1681	fabI	lipid metabolism	0.082	1.16	-0.7		0.8	0.57	1.46
F9UPL2_LACPL	lp_1884	–	Extracellular protein with LysM peptidoglycan binding domain	0.097	0.043	-0.05		0.19	0.01	0.63
F9UQH9_LACPL	lp_2260	–	Extracellular protein	0.039	0.253	-0.05		0.54	0.38	0.7
F9UQT4_LACPL	lp_2393	–	Lipoprotein	0.29	0.033	-0.23		0.09	0.06	0.1
F9URR0_LACPL	lp_2794	–	Flavodoxin	-0.08	0.264	0.271		0.8	0.27	0.09
F9URU9_LACPL	lp_2847	–	Extracellular transglycosylase with LysM peptidoglycan binding domain	0.082	-0.06	-0.13		0.42	0.64	0.05
F9USY1_LACPL	lp_0169	dhaL	PEP-glycerone phosphotransferase subunit	-0.33	0.18	0.288		0.56	0.52	1.98
F9UT64_LACPL	lp_0267	tagD1	Glycerol-3-phosphate cytidylyltransferase	0.066	0.329	0.125		0.81	0.1	0.02
F9UTB8_LACPL	lp_3214	–	Cystathionine ABC transporter	-0.01	-0.11	-0.01		0.3	0.03	0.04
LUXS_LACPL	lp_0774	luxS	S-ribosylhomocysteine lyase	0.255	0.439	-0.12		0.65	0.3	0.82
PRSA1_LACPL	lp_1452	prtM1	Peptidyl-prolyl isomerase	0.168	0.144	0.158		0.44	0.3	0.21
QUEA_LACPL	lp_2285	queA	SAM:tRNA ribosyltransferase-isomerase	0.148	0.276	-0.18		0.34	0.02	0.08
RL11_LACPL	lp_0619	rplK	50S ribosomal protein L11	0.027	0.675	-0.58		0.34	0.29	1.51
RL17_LACPL	lp_1063	rplQ	50S ribosomal protein L17	0.102	0.642	-0.35		0.89	0.31	0.56
RL20_LACPL	lp_1517	rplT	50S ribosomal protein L20	0.032	0.537	-0.31		0.7	0.49	0.89
RL22_LACPL	lp_1039	rplV	50S ribosomal protein L22	0.026	0.374	-0.64		1.49	0.52	0.66
RL23_LACPL	lp_1035	rplW	50S ribosomal protein L23	0.018	0.51	-0.51		0.49	0.16	1.16
RL27_LACPL	lp_1594	rpmA	50S ribosomal protein L27	-0	-0.46	-0.23		1.9	1.7	0.19
RL28_LACPL	lp_1624	rpmB	50S ribosomal protein L28	-0.18	0.016	-0.24		0.27	0.27	0.15
RL35_LACPL	lp_1516	rpmI	50S ribosomal protein L35	0.046	0.44	-0.33		0.22	0.08	0.15
RL6_LACPL	lp_1051	rplF	50S ribosomal protein L6	0.079	0.935	-0.58		2.37	0.62	0.31
RS11_LACPL	lp_1061	rpsK	30S ribosomal protein S11	0.069	-0.53	-0.48		0.85	0.66	0.8
RS14Z_LACPL	lp_1048	rpsN	30S ribosomal protein S14	0.061	0.551	-0.71		1.42	1.5	0.21
RS19_LACPL	lp_1038	rpsS	30S ribosomal protein S19	0	-0	-0.47		1.08	0.82	0.08
TIG_LACPL	lp_2118	tig	trigger factor, peptidylprolyl isomerase	0.03	0.158	-0.04		1	0.06	0.52
Y1712_LACPL	lp_1712	xylH	4-oxalocrotonate tautomerase	-0.23	0.41	0.368		0.91	0.71	0.48

RNAseq values represent Log₂ fold change of gene abundance. Proteomic values represent Log₂ fold change of emPAI values.

Descriptions of the 31 genes identified as upregulated by proteomics at all timepoints along with their corresponding RNAseq Log₂ fold changes.