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. 2019 Apr 11;8(15):e00086-19. doi: 10.1128/MRA.00086-19

TABLE 1.

Genomic features of metagenome-associated genomesa

Genome feature Data for strain:
Candidatus Colwellia aromaticivorans” sp. nov. Candidatus Halocynthiibacter alkanivorans” sp. nov. Candidatus Ulvibacter alkanivorans” sp. nov.
Coverage (×) 97 19 19
Completeness (%) 97.4 98.7 93.1
Contamination (%) 1.8 2.15 0.2
Size (Mbp) 3.71 4.7 2.7
No. of contigs 101 171 117
N50 value (bp) 72,862 55,069 47,750
No. of ORFsb 3,278 4,540 2,625
16S rRNA similarity with closest relative (%) Colwellia rossensis S51-W(gv)1T (98.5) Halocynthiibacter arcticus PAMC 20958T (97.2) Ulvibacter antarcticus IMCC3101T (96.2)
GGDc with closest relative (%) Colwellia rossensis S51-W(gv)1T (ND)d Halocynthiibacter arcticus PAMC 20958T (19.4) Ulvibacter antarcticus DSM 23424 (17.8)
AAI with closest relative (%) Colwellia rossensis S51-W(gv)1T (ND) Halocynthiibacter arcticus PAMC 20958T (65.4) Ulvibacter antarcticus DSM 23424 (71.8)
a

16S rRNA sequences recovered were retrieved with RNAmmer (14) and compared with BLAST (15) against the Silva database (16, 17). The closest were selected to align through ssu-align v0.1.1 (18, 19) and perform phylogeny through IQ-TREE (2022). The 16S rRNA similarity was calculated with TaxonDC (23). AAI and DDH values were performed with CompareM (https://github.com/dparks1134/CompareM) and GGDC (http://ggdc.dsmz.de/), respectively. The genome of Ulvibacter antarcticus DSM 23424 was used for AAI and DDH analysis. In silico-predicted phenotype analysis reveals that “Candidatus Colwellia aromaticivorans” sp. nov. is positive for chitin hydrolysis, propionate utilization, and dl-lactate utilization. “Candidatus Halocynthiibacter alkanivorans” sp. nov. is positive for acid production from d-ribose, sucrose, and glycerol; acetate utilization; indole production; and nitrate reduction. “Candidatus Ulvibacter alkanivorans” sp. nov. is positive for dl-lactic acid utilization.

b

ORFs, open reading frames.

c

GGD, genome-to-genome distance.

d

ND, not determined.