TABLE 1.
Genomic features of metagenome-associated genomesa
Genome feature | Data for strain: |
||
---|---|---|---|
“Candidatus Colwellia aromaticivorans” sp. nov. | “Candidatus Halocynthiibacter alkanivorans” sp. nov. | “Candidatus Ulvibacter alkanivorans” sp. nov. | |
Coverage (×) | 97 | 19 | 19 |
Completeness (%) | 97.4 | 98.7 | 93.1 |
Contamination (%) | 1.8 | 2.15 | 0.2 |
Size (Mbp) | 3.71 | 4.7 | 2.7 |
No. of contigs | 101 | 171 | 117 |
N50 value (bp) | 72,862 | 55,069 | 47,750 |
No. of ORFsb | 3,278 | 4,540 | 2,625 |
16S rRNA similarity with closest relative (%) | Colwellia rossensis S51-W(gv)1T (98.5) | Halocynthiibacter arcticus PAMC 20958T (97.2) | Ulvibacter antarcticus IMCC3101T (96.2) |
GGDc with closest relative (%) | Colwellia rossensis S51-W(gv)1T (ND)d | Halocynthiibacter arcticus PAMC 20958T (19.4) | Ulvibacter antarcticus DSM 23424 (17.8) |
AAI with closest relative (%) | Colwellia rossensis S51-W(gv)1T (ND) | Halocynthiibacter arcticus PAMC 20958T (65.4) | Ulvibacter antarcticus DSM 23424 (71.8) |
16S rRNA sequences recovered were retrieved with RNAmmer (14) and compared with BLAST (15) against the Silva database (16, 17). The closest were selected to align through ssu-align v0.1.1 (18, 19) and perform phylogeny through IQ-TREE (20–22). The 16S rRNA similarity was calculated with TaxonDC (23). AAI and DDH values were performed with CompareM (https://github.com/dparks1134/CompareM) and GGDC (http://ggdc.dsmz.de/), respectively. The genome of Ulvibacter antarcticus DSM 23424 was used for AAI and DDH analysis. In silico-predicted phenotype analysis reveals that “Candidatus Colwellia aromaticivorans” sp. nov. is positive for chitin hydrolysis, propionate utilization, and dl-lactate utilization. “Candidatus Halocynthiibacter alkanivorans” sp. nov. is positive for acid production from d-ribose, sucrose, and glycerol; acetate utilization; indole production; and nitrate reduction. “Candidatus Ulvibacter alkanivorans” sp. nov. is positive for dl-lactic acid utilization.
ORFs, open reading frames.
GGD, genome-to-genome distance.
ND, not determined.