. 2019 Apr 11;19:352. doi: 10.1186/s12885-019-5536-1

Table 3.

The identified HPV-HPV junction positions and sequence reads in the tumors containing the deleted HPV populations

Tumor	HPV-HPV junction positions in HPV16 genome	Deleted length (nt)	Deleted viral genes	Identified HPV-HPV junction sequence
683	501 --- 6984	6447	E1^a, E2, E4, E5, L2, L1, URR^a	*AGTATAGTGGTGGAAGTGGG*GGGGGTGTGCAAACCGTTTT
601	6204 --- 3689	5391	L2^a, E6, E7, URR, E1, E2, E4, E5	*TTCCTTTAGGACGCAAATTT*TTACTACAAGCAGGATTGAA
711	1865 --- 7037	5172	E1^a, E2, E4, E5, L2, L1, URR^a	*GACGTGGTCCAGATTAAGTT*TACTAAACTACAATAATTCA
568	6680 --- 6924	244	URR^a	*TAAACTTGTACGTTTCCTGC*AGTTCATACATGAACTGTGT
515	1221 --- 7062	5841	E1^a, E2, E4, E5, L2, L1, URR^a	*TTGTAAAGGATTGTGCAACA*CTAAGGGCGTAACCGAAATCGGT
532	1091 --- 6897	5806	E1^a, E2, E4, E5, L2, L1, URR^a	*TCACAGATGGTACAATGGGC*TTCTAAGGCCAACTAAATGT
676	5852 ---6002	150	L1^a	*TACATATAAAAATACTAACT*GGAATTTTGGTCTACAACCT
624	6967 --- 1493	2452	URR^a, E6, E7, E1^a	*TAAATGTCACCCTAGTTCAT*ACATGAACTGTGTAAAGGTT

^aindicates that only partial deletion was found in that viral gene