Table 3.
GO terms and KEGG pathways enriched in the core reference genes of the scallop M. yessoensis
| ID code | Term/Pathway | Gene Number | P value | FDR |
|---|---|---|---|---|
| GO | ||||
| GO:0009058 | biosynthetic process | 119 | 2.64E-36 | 1.07E-34 |
| GO:0044237 | cellular metabolic process | 184 | 1.18E-33 | 4.43E-32 |
| GO:0009056 | catabolic process | 24 | 1.48E-03 | 6.50E-03 |
| GO:0045184 | establishment of protein localization | 17 | 3.45E-03 | 1.38E-02 |
| GO:0030529 | ribonucleoprotein complex | 83 | 1.77E-218 | 4.30E-216 |
| GO:0043228 | nonmembrane-bounded organelle | 89 | 5.81E-95 | 5.14E-93 |
| GO:0043234 | protein complex | 67 | 8.58E-34 | 3.34E-32 |
| GO:0016469 | proton-transporting two-sector ATPase complex | 13 | 1.12E-13 | 1.95E-12 |
| GO:0043227 | membrane-bounded organelle | 56 | 2.46E-12 | 3.86E-11 |
| GO:0044455 | mitochondrial membrane part | 9 | 8.59E-11 | 1.06E-09 |
| GO:0003735 | structural constituent of ribosome | 81 | 4.85E-255 | 4.73E-252 |
| GO:0004129 | cytochrome-c oxidase activity | 5 | 1.48E-07 | 1.33E-06 |
| GO:0051540 | metal cluster binding | 10 | 1.73E-07 | 1.52E-06 |
| GO:1901363 | heterocyclic compound binding | 106 | 2.72E-04 | 1.43E-03 |
| KEGG | ||||
| map03010 | Ribosome | 87 | 2.89E-199 | 5.41E-197 |
| map00190 | Oxidative phosphorylation | 58 | 3.20E-56 | 1.20E-54 |
| map03050 | Proteasome | 25 | 2.22E-24 | 5.94E-23 |
| map03013 | RNA transport | 25 | 3.32E-06 | 6.90E-05 |
| map04141 | Protein processing in endoplasmic reticulum | 21 | 1.15E-05 | 2.14E-04 |
| map00020 | Citrate cycle (TCA cycle) | 7 | 3.26E-03 | 4.06E-02 |