Table 3.
Positive Selection among T3SE Families.
| Total | Number of | Alignment | Positively | Positively | |
|---|---|---|---|---|---|
| Number | Unique | Length | Selected | Selected | |
| Family | of Alleles | Alleles1 | (Codons) | Sites (N) | Sites (%) |
| AvrA | 27 | 12 | 906 | 1 | 0.11 |
| AvrB | 277 | 75 | 366 | 0 | 0.00 |
| AvrE | 608 | 360 | 2248 | 3 | 0.13 |
| AvrPto | 170 | 33 | 275 | 0 | 0.00 |
| AvrRpm | 171 | 39 | 301 | 0 | 0.00 |
| AvrRpt | 25 | 12 | 261 | 3 | 1.15 |
| HopA | 277 | 105 | 449 | 0 | 0.00 |
| HopB/HopAC | 770 | 362 | 2265 | 0 | 0.00 |
| HopC | 115 | 28 | 271 | 0 | 0.00 |
| HopD/HopAO | 587 | 228 | 981 | 0 | 0.00 |
| HopE | 103 | 31 | 274 | 0 | 0.00 |
| HopF/HopBB | 380 | 125 | 385 | 0 | 0.00 |
| HopG | 190 | 70 | 528 | 0 | 0.00 |
| HopH | 265 | 54 | 226 | 2 | 0.88 |
| HopI | 400 | 166 | 601 | 0 | 0.00 |
| HopK/AvrRps | 156 | 34 | 338 | 3 | 0.89 |
| HopL | 102 | 53 | 902 | 1 | 0.11 |
| HopM | 620 | 223 | 1034 | 2 | 0.19 |
| HopN | 74 | 25 | 350 | 0 | 0.00 |
| HopO | 227 | 75 | 391 | 1 | 0.26 |
| HopQ | 304 | 86 | 504 | 3 | 0.60 |
| HopR | 424 | 231 | 2001 | 6 | 0.30 |
| HopS | 114 | 26 | 179 | 2 | 1.12 |
| HopT | 97 | 34 | 398 | 2 | 0.50 |
| HopU | 15 | 4 | 264 | 0 | 0.00 |
| HopV | 307 | 74 | 738 | 2 | 0.27 |
| HopW/HopAE | 618 | 219 | 1125 | 1 | 0.09 |
| HopX | 308 | 83 | 452 | 3 | 0.66 |
| HopY | 201 | 53 | 287 | 2 | 0.70 |
| HopZ | 396 | 79 | 771 | 2 | 0.26 |
| HopAA | 752 | 218 | 578 | 0 | 0.00 |
| HopAB/HopAY | 553 | 204 | 893 | 5 | 0.56 |
| HopAD | 30 | 12 | 675 | 5 | 0.74 |
| HopAF | 395 | 105 | 289 | 3 | 1.04 |
| HopAG | 347 | 141 | 742 | 17 | 2.29 |
| HopAH | 899 | 317 | 479 | 1 | 0.21 |
| HopAI | 326 | 110 | 268 | 1 | 0.37 |
| HopAL | 33 | 15 | 679 | 0 | 0.00 |
| HopAM | 54 | 15 | 281 | 3 | 1.07 |
| HopAQ | 26 | 8 | 98 | 2 | 2.04 |
| HopAR | 105 | 30 | 312 | 1 | 0.32 |
| HopAS | 421 | 164 | 1396 | 4 | 0.29 |
| HopAT/HopAV | 604 | 223 | 1858 | 0 | 0.00 |
| HopAU | 243 | 58 | 815 | 0 | 0.00 |
| HopAW | 117 | 18 | 266 | 1 | 0.38 |
| HopAX | 63 | 33 | 448 | 0 | 0.00 |
| HopAZ | 283 | 98 | 340 | 1 | 0.29 |
| HopBA | 43 | 16 | 239 | 0 | 0.00 |
| HopBC | 26 | 9 | 254 | 2 | 0.79 |
| HopBD | 141 | 50 | 304 | 3 | 0.99 |
| HopBE | 11 | 6 | 633 | 0 | 0.00 |
| HopBF | 104 | 25 | 252 | 0 | 0.00 |
| HopBG | 13 | 5 | 134 | 0 | 0.00 |
| HopBH | 84 | 26 | 427 | 1 | 0.23 |
| HopBI | 106 | 31 | 452 | 2 | 0.44 |
| HopBJ | 8 | 6 | 260 | 0 | 0.00 |
| HopBK | 75 | 32 | 89 | 1 | 1.12 |
| HopBL | 94 | 50 | 819 | 0 | 0.00 |
| HopBM | 40 | 10 | 157 | 0 | 0.00 |
| HopBN | 80 | 20 | 301 | 1 | 0.33 |
| HopBO/HopX | 93 | 32 | 355 | 1 | 0.28 |
| HopBP/HopZ | 83 | 31 | 411 | 5 | 1.22 |
| HopBQ/HopH | 20 | 3 | 215 | 0 | 0.00 |
| HopBR/HopBN | 5 | 1 | 133 | 0 | 0.00 |
| HopBS/HopAV | 3 | 1 | 52 | 0 | 0.00 |
| HopBT/HopAB | 1 | 1 | 194 | 0 | 0.00 |
| HopBU/HopAB | 1 | 1 | 190 | 0 | 0.00 |
| HopBV/HopAJ | 1 | 1 | 677 | 0 | 0.00 |
| HopBW/HopBH | 1 | 1 | 171 | 0 | 0.00 |
| HopBX/HopL | 1 | 1 | 182 | 0 | 0.00 |
1Unique DNA sequences.