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. 2019 Apr 10;25(4):617–629.e7. doi: 10.1016/j.chom.2019.02.016
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti adenovirus protein VI (affinity purified) Urs F. Greber (Burckhardt et al., 2011) N/A
Goat anti-Rabbit IgG (H+L) AF647 Thermo Fisher Scientific Cat# A-21245; RRID: AB_2535813; Dil: 1:500
Galectin 3 Monoclonal Antibody (M3/38) PE Thermo Fisher Scientific/ eBioscience Cat# BMS1043; RRID: AB_10597892; 1μg/mL
Anti-Human IgG (Fab specific)-FITC antibody produced in goat Sigma-Aldrich Cat# F5512; RRID: AB_259649; Dil: 1:200
Anti-Human IgG (Fab specific)- antibody produced in goat Sigma-Aldrich Cat# I5260; RRID: AB_260206; Dil: 1:200
Donkey Anti-Goat IgG (H+L) Antibody, AF647 Thermo Fisher Scientific Cat# A-21447; RRID: AB_141844; Dil: 1:1000
Lamin B1 antibody Abcam Cat# ab16048; RRID: AB_10107828; Dil: 1:1000
Goat Anti-Rabbit IgG (H+L) Antibody AF568 Thermo Fisher Scientific Cat# A-11011; RRID: AB_143157; Dil: 1:1000
Anti-Adenovirus antibody Millipore Cat# AB1056; RRID: AB_90213; Dil: 1:1000
52 kDa Ro/SSA (D-12) antibody (TRIM21) Santa Cruz Biotechnology Cat# sc-25351; RRID: AB_628286
Anti-C4b antibody Abcam ab181241; Dil: 1:1000
β-Actin Antibody (C4) Santa Cruz Biotechnology Cat# sc-47778 HRP; RRID: AB_2714189; 0.04μg/mL
Rabbit anti goat IgG (H/L) antibody Bio-Rad / AbD Serotec Cat# 5160-2104; RRID: AB_619999; Dil: 1:5000
Anti-Mouse IgG (whole molecule)-Peroxidase antibody produced in rabbit Sigma-Aldrich Cat# A9044; RRID: AB_258431; Dil: 1:5000
Anti-Rabbit IgG (whole molecule)-Peroxidase antibody produced in goat Sigma-Aldrich Cat# A0545; RRID: AB_257896; Dil: 1:5000
6X His tag antibody [HIS-1] (Alkaline Phosphatase) Abcam Cat# ab49746; RRID: AB_867457; Dil:1:5000
C1q complement antibody Dako Cat# A0136; RRID: AB_2335698; Dil:1:10000
Rabbit IgG HRP Linked Whole Ab antibody GE Healthcare Cat# GENA934; RRID: AB_2722659; Dil:1:10000
Anti human IgG (Fc-specifc) AP linked antibody Sigma-Aldrich Cat#:A9544; RRID: AB_258459; Dil: 1:5000
iTAg Tetramer/PE - H-2 Kb OVA (SIINFEKL) MBL Cat# TB-5001-1; 2μL/sample

Bacterial and Virus Strains

Adenovirus 5 (E1/E3 deleted) ViraQuest VQAd CMV eGFP/mCherry

Chemicals, Peptides, and Recombinant Proteins

Complement serum CompTech Cat#NHS
C1q depleted serum CompTech Cat#A300
C2 depleted serum CompTech Cat#A312
C3 depleted serum CompTech Cat#A314
C4 depleted serum CompTech Cat#A308
C1q CompTech Cat#A099
C1 CompTech Cat#A098
C4 CompTech Cat#A105
Adenovirus Type 5 Hexon BioRad MPP002

Critical Commercial Assays

Human Complement C4 ELISA Kit abcam Cat#ab108825
RNeasy Micro Kit Qiagen Cat#74004
DNeasy Blood & Tissue Kit Qiagen Cat# 69504

Deposited Data

Raw and analyzed data (Bottermann et al., 2018) GEO: GSE119119

Experimental Models: Cell Lines

HEK293T ATCC Cat# CRL-3216; RRID: CVCL_0063
HeLa ATCC Cat# CCL-2; RRID: CVCL_0030
THP-1 ATCC Cat#:TIB-202; RRID: CVCL_0006

Experimental Models: Organisms/Strains

C57BL/6J The Jackson Laboratory JAX:000664; RRID: IMSR_JAX:000664
C57BL/6-Trim21tm1Hm/J (Yoshimi et al., 2010) JAX:010724; RRID: IMSR_JAX:010724
B6.129S4-C4tm1Crr/J Provided by Michael C. Carroll JAX:003643; RRID: IMSR_JAX:003643

Oligonucleotides

TRIM21 targeting gRNA; 5’ATGCTCACAGGCT
CCACGAA3’
(McEwan et al., 2017) N/A
Ad5 Taqman probe; Ad5 for: TTGCGTCGGTG
TTGGAGA, Ad5 rev: AGGCCAAGATCGTGAA
GAACC, Ad5 probe: FAM-CTGCACCACAT
TTCGGCCCCAC-TAMRA
(Bottermann et al., 2018) N/A
CAR siRNA Santa Cruz sc-29906
Control siRNA Santa Cruz sc-37007

Recombinant DNA

pSpCas9(BB)-2A-GFP (PX458) (Ran et al., 2013) Addgene #48138

Software and Algorithms

FlowJo, LLC Tree Star https://www.flowjo.com/solutions/flowjo/downloads
GraphPad Prism version 7.00 GraphPad Software https://www.graphpad.com/scientific-software/prism/
Fiji (Schindelin et al., 2012) https://fiji.sc/#download
ImageJ (Schneider et al., 2012) https://imagej.nih.gov/ij/download.html
Image J plugin ComDet v0.3.7 Eugene Katrukha https://imagej.net/Spots_colocalization_(ComDet)