REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti adenovirus protein VI (affinity purified) | Urs F. Greber (Burckhardt et al., 2011) | N/A |
Goat anti-Rabbit IgG (H+L) AF647 | Thermo Fisher Scientific | Cat# A-21245; RRID: AB_2535813; Dil: 1:500 |
Galectin 3 Monoclonal Antibody (M3/38) PE | Thermo Fisher Scientific/ eBioscience | Cat# BMS1043; RRID: AB_10597892; 1μg/mL |
Anti-Human IgG (Fab specific)-FITC antibody produced in goat | Sigma-Aldrich | Cat# F5512; RRID: AB_259649; Dil: 1:200 |
Anti-Human IgG (Fab specific)- antibody produced in goat | Sigma-Aldrich | Cat# I5260; RRID: AB_260206; Dil: 1:200 |
Donkey Anti-Goat IgG (H+L) Antibody, AF647 | Thermo Fisher Scientific | Cat# A-21447; RRID: AB_141844; Dil: 1:1000 |
Lamin B1 antibody | Abcam | Cat# ab16048; RRID: AB_10107828; Dil: 1:1000 |
Goat Anti-Rabbit IgG (H+L) Antibody AF568 | Thermo Fisher Scientific | Cat# A-11011; RRID: AB_143157; Dil: 1:1000 |
Anti-Adenovirus antibody | Millipore | Cat# AB1056; RRID: AB_90213; Dil: 1:1000 |
52 kDa Ro/SSA (D-12) antibody (TRIM21) | Santa Cruz Biotechnology | Cat# sc-25351; RRID: AB_628286 |
Anti-C4b antibody | Abcam | ab181241; Dil: 1:1000 |
β-Actin Antibody (C4) | Santa Cruz Biotechnology | Cat# sc-47778 HRP; RRID: AB_2714189; 0.04μg/mL |
Rabbit anti goat IgG (H/L) antibody | Bio-Rad / AbD Serotec | Cat# 5160-2104; RRID: AB_619999; Dil: 1:5000 |
Anti-Mouse IgG (whole molecule)-Peroxidase antibody produced in rabbit | Sigma-Aldrich | Cat# A9044; RRID: AB_258431; Dil: 1:5000 |
Anti-Rabbit IgG (whole molecule)-Peroxidase antibody produced in goat | Sigma-Aldrich | Cat# A0545; RRID: AB_257896; Dil: 1:5000 |
6X His tag antibody [HIS-1] (Alkaline Phosphatase) | Abcam | Cat# ab49746; RRID: AB_867457; Dil:1:5000 |
C1q complement antibody | Dako | Cat# A0136; RRID: AB_2335698; Dil:1:10000 |
Rabbit IgG HRP Linked Whole Ab antibody | GE Healthcare | Cat# GENA934; RRID: AB_2722659; Dil:1:10000 |
Anti human IgG (Fc-specifc) AP linked antibody | Sigma-Aldrich | Cat#:A9544; RRID: AB_258459; Dil: 1:5000 |
iTAg Tetramer/PE - H-2 Kb OVA (SIINFEKL) | MBL | Cat# TB-5001-1; 2μL/sample |
Bacterial and Virus Strains | ||
Adenovirus 5 (E1/E3 deleted) | ViraQuest | VQAd CMV eGFP/mCherry |
Chemicals, Peptides, and Recombinant Proteins | ||
Complement serum | CompTech | Cat#NHS |
C1q depleted serum | CompTech | Cat#A300 |
C2 depleted serum | CompTech | Cat#A312 |
C3 depleted serum | CompTech | Cat#A314 |
C4 depleted serum | CompTech | Cat#A308 |
C1q | CompTech | Cat#A099 |
C1 | CompTech | Cat#A098 |
C4 | CompTech | Cat#A105 |
Adenovirus Type 5 Hexon | BioRad | MPP002 |
Critical Commercial Assays | ||
Human Complement C4 ELISA Kit | abcam | Cat#ab108825 |
RNeasy Micro Kit | Qiagen | Cat#74004 |
DNeasy Blood & Tissue Kit | Qiagen | Cat# 69504 |
Deposited Data | ||
Raw and analyzed data | (Bottermann et al., 2018) | GEO: GSE119119 |
Experimental Models: Cell Lines | ||
HEK293T | ATCC | Cat# CRL-3216; RRID: CVCL_0063 |
HeLa | ATCC | Cat# CCL-2; RRID: CVCL_0030 |
THP-1 | ATCC | Cat#:TIB-202; RRID: CVCL_0006 |
Experimental Models: Organisms/Strains | ||
C57BL/6J | The Jackson Laboratory | JAX:000664; RRID: IMSR_JAX:000664 |
C57BL/6-Trim21tm1Hm/J | (Yoshimi et al., 2010) | JAX:010724; RRID: IMSR_JAX:010724 |
B6.129S4-C4tm1Crr/J | Provided by Michael C. Carroll | JAX:003643; RRID: IMSR_JAX:003643 |
Oligonucleotides | ||
TRIM21 targeting gRNA; 5’ATGCTCACAGGCT CCACGAA3’ |
(McEwan et al., 2017) | N/A |
Ad5 Taqman probe; Ad5 for: TTGCGTCGGTG TTGGAGA, Ad5 rev: AGGCCAAGATCGTGAA GAACC, Ad5 probe: FAM-CTGCACCACAT TTCGGCCCCAC-TAMRA |
(Bottermann et al., 2018) | N/A |
CAR siRNA | Santa Cruz | sc-29906 |
Control siRNA | Santa Cruz | sc-37007 |
Recombinant DNA | ||
pSpCas9(BB)-2A-GFP (PX458) | (Ran et al., 2013) | Addgene #48138 |
Software and Algorithms | ||
FlowJo, LLC | Tree Star | https://www.flowjo.com/solutions/flowjo/downloads |
GraphPad Prism version 7.00 | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
Fiji | (Schindelin et al., 2012) | https://fiji.sc/#download |
ImageJ | (Schneider et al., 2012) | https://imagej.nih.gov/ij/download.html |
Image J plugin ComDet v0.3.7 | Eugene Katrukha | https://imagej.net/Spots_colocalization_(ComDet) |