Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.
| Tool | Version | Task | Citation |
|---|---|---|---|
| Sickle | 1.33 | Read trimming | https://github.com/najoshi/sickle |
| SPAdes | 3.10.1 | Assembly | Bankevich et al. (2012) |
| metaSPAdes | 3.10.1 | Assembly | Nurk et al. (2017) |
| MEGAHIT | 1.1.4 | Assembly | Li et al. (2016a) |
| BBMap | 37.36 | Coverage | https://sourceforge.net/projects/bbmap/ |
| GLIMMER | 3.02 | Gene prediction | Delcher et al. (1999) |
| BLAST+ | 2.6.0 | Sequence Analysis | ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/ |
