Skip to main content
. Author manuscript; available in PMC: 2019 Apr 15.
Published in final edited form as: Methods Enzymol. 2018 Feb 26;601:391–418. doi: 10.1016/bs.mie.2017.11.037
filename detail
$name_peaks.bedgraph Recentered hotspots with strength estimate (BEDGRAPH file)
Column 1: chromosome
Column 2: hotspot start
Column 3: hotspot end
Column 4: hotspot strength
Note: Hotspots are recentered as described in 15. Briefly, the hotspot center is defined as the midpoint of the forward and reverse strand ssDNA coverage.
$name_peaks.tab Recentered hotspots table:
Column 1: chromosome
Column 2: hotspot start
Column 3: hotspot end
Column 4: hotspot strength
Column 5: strength as percentage of total
Column 6: strength as rank
Column 7: signal fragments
Column 8: noise fragments