. 2019 Apr 5;25:2488–2504. doi: 10.12659/MSM.915382

Supplementary Table 2.

Common differentially expressed genes among all three gene expression profiles.

Common DEGs	Gene symbol
Up-regulated DEGs	COL1A, COL5A1, COL1A1, INHBA, COL6A3, MFAP2, SPARC, SERPINH1, COL8A1, HOXA13, FAP, COL18A1, COL5A2, COL3A1, CDH11, EDNRA, COL6A2, PRRX1, VCAN, HOXA10, SERPINE2, ADAMTS2, SULF1, FN1, NID2, PDGFRB, BGN, COL12A1, SEPT11, THY1, RAB31, THBS2, COL4A1, COL4A2, LGALS1, TIMP1, FBN1, IGFBP4, BICC1, CTSK, APOC1, HEYL, TGFBI, P4HA3, HOXB7, PLXDC2, BMP1, RCN3, COL10A1, GPNMB, TMEM158, ADAMTS12, GUCY1A3, PDLIM7, ACTN1, SFRP4, EFEMP2, SERPINF1, FSTL1, ASPN, IGFBP7, CLEC11A, AMIGO2, SALL4, SFRP2, CLDN1, CTHRC1, CST1, CDH3, FNDC1, PGF, SPHK1, ALDH1A3, WISP1, GUCY1B3, HES4, MGP, DOK5, C3, RARRES1, FLNA, CEBPB, SULF2, NRP1, ELOVL5, ISLR, LEF1, ZAK, PMEPA1, AEBP1, TNFRSF11B, SVIL, SPP1, GDPD5, OLFML2B, LOX, EMILIN1, PLEKHO1, HTRA1, GPR161, DGKH, ANTXR1, GXYLT2, PLAU, FSCN1, SRPX2, IGF2BP3, EPHB2, ANOS1, CEMIP, FBXO32, COMP, COL11A1, THBS4, PLEKHG2, E2F3, ADAM12, DNM1, ITGBL1, MFGE8, RIN3, NRP2, CTSL, CPXM1, ENG, NRK, MMP11, S100A10, DPYSL3, FMNL3, MYO1B, FKBP10, CST4, KLHL23, SPOCK1, FGD6, CCDC80, TNFSF4, BAG2, MLLT11, THBS1, TGM2, PLPPR4, CST2, ITGA5, MIR100HG, PLA2G7, VAC14, ZNF423, CRISPLD1, GINS4, NT5DC2, MMP7, FXYD5, GREM1, FOXC2, CLDN3, FAM83D, FJX1, OLR1, DUXAP10, KLK10, HS3ST3A1, ADAMTS6, SLCO2B1, LY6E, BOC, AHNAK2, HOXC10, SNX10, BUB1, DTL, FOXC1, IL32, MYL9, CXCL8, NOX4, CAP2, WNT2, ETV6, LILRB1, PDE3A, RHOJ, TREM1, SERPINE1, YBX2, TPM2, STC2, MXRA7, TREM2, PLEKHA4, MEOX2, CXCL9, SLC1A3, TAGLN, HOXC6
Down-regulated DEGs	MUC5AC, C8orf49, ZNF57, UBL3, MAGI1, AKR7A3, PSAPL1, MFSD4A, GATA4, SMIM6, ALDH6A1, DPCR1, TRIM50, NFE2L2, CLIC6, KLK11, FAM107B, TMPRSS2, MUC6, METTL7A, RASSF6, VSIG1, SGPP2, RAB27A, CWH43, WIPF3, ELOVL6, SVIP, PELI2, C1orf116, FMO5, ADTRP, HOMER2, SHROOM3, SMIM5, ELL2, AQP4, EPN3, CYSTM1, PPFIBP2, PBLD, FA2H, RNASE4, CAPN9, ATP11B, BEX5, C1orf210, FAM189A2, VSIG2, PTER, RDH12, CA2, CXCL17, PXMP2, PLPP5, SLC16A7, TPCN2, KCNE2, CLDN18, TMEM220, DGKD, CMTM4, SLC41A2, KCNJ15, SIDT2, ERO1B, DNER, ANKRD22, DHRS7, PAIP2B, CYP3A5, MYZAP, FBXL13, SSTR1, FGD4, FAM20A, CA9, ALAD, RAB27B, SOSTDC1, PDGFD, LIPH, TMED6, ALDH3A1, UBE2QL1, TMEM92, MECOM, ARHGEF28, RNASE1, SULT1B1, PDIA2, CPA2, ADAM28, VSTM2A, ADGRG2, PLLP, TMEM171, TMEM116, KLHDC7A, LDHD, ADRB2, SH3BGRL2, TFF1, EPB41L4B, PGC, IRS4, CNTN3, B4GALNT3, ATP4A, ARHGEF37, GCNT2, PPID, SGK2, CCKBR, MAL, ATP4B, RASSF10, SLC26A9, CYP3A43, HPGD, NEDD4L, NECTIN3, PTPRZ1, AKR1C3, IGFBP2, FAM46C, SHISA6, MUM1L1, HMGN2P46, FBP2, ANG, KIAA1804, SPINK2, GRAMD1C, SCGB2A1, GUCA2B, C16orf89, GKN1, AKR1B10, KCNJ16, PPP1R36, GATA6-AS1, ALDOB, SST, PCAT18, LIPF, GATA5, TMEM125, NTN4, ENPP6, GPT2, BCL2L15, TFF2, IQGAP2, PTPRN2, SYTL2, RPS6KA6, KIAA1324, PSCA, OASL, GABRB3, ASPA, SCNN1G, SLC7A8, SMPD3, LYPD6B, CYP2C18, ALDH1A1, PLAC8, AHCYL2, GIF, ASCL1, ESRRG, RAB11B-AS1, CHGA, PIGR, ACVR1C, NOSTRIN, SPINK7, ADH7,TSPAN12, ACKR4, GKN2, NRG4, PKIB, CAPN13, RNF128, NKX2-3, ATP8A1, ZBTB7C, SH3RF2, SCNN1B, GDPD1, SYTL5, TEX9, UGT2B15, HMGN5, B3GNT6, SULT2A1, GOLM1, PIWIL2, ACER2, CYP2C9, SOWAHA, ST6GALNAC1, GSTA4, ODAM, PRR15L, TMEM266, SCGN, SLC28A2, TMEM27, SELENBP1, ANKRD29, ATP13A4, HAPLN1, MAMDC2, C4orf19, REG1A, UPK1B, SCN3A, AMPD1, SLC4A4, FAM3B, SMIM24, ANXA10, IL1R2, AKR1C1, SLC14A1, HHIP, CTSE, LRRC66, KCNMB2, STYK1, GCNT1, NDOR1, IRX3, PRDM16, PER3, ZNF793-AS1, TCEA3, SCIN, NR3C2, DUSP4, SLC26A7, UNC5B-AS1, OSBPL7, XK, ARL14, FER1L4, MAP7D2, TMEM38A, ADAMTS15, CAPN8, TPH1, GATA6, SULT1C2, NQO1, KLF4, ITPKA, DDX60, SLC44A4, KBTBD12, RHBDL2, MUC1, KAZALD1, MST1L, DUOX2, EYA2, NEUROD1, TFCP2L1, PDZD3, PIK3C2G, RMST, JCHAIN, STK32B, HRASLS2, RFX6, TCAIM, GAS2, MRAP2, CYTIP, SERPINA4, CDHR3, GCKR, POU2AF1, RGS7, CYP2C19, HGD, SPINK1, PRSS12, PRLR, APOBEC1, TRPA1, GSTA1, NCKAP5, TRIQK, LRRC31, STX19, KRT20, BMP5, ATP2A3, LTF, IGH, ADH1C, IL1RN, LDLR, MGAM, TOX3, ABCC13, FCRL5

Common DEGs

Gene symbol

Up-regulated DEGs

COL1A, COL5A1, COL1A1, INHBA, COL6A3, MFAP2, SPARC, SERPINH1, COL8A1, HOXA13, FAP, COL18A1, COL5A2, COL3A1, CDH11, EDNRA, COL6A2, PRRX1, VCAN, HOXA10, SERPINE2, ADAMTS2, SULF1, FN1, NID2, PDGFRB, BGN, COL12A1, SEPT11, THY1, RAB31, THBS2, COL4A1, COL4A2, LGALS1, TIMP1, FBN1, IGFBP4, BICC1, CTSK, APOC1, HEYL, TGFBI, P4HA3, HOXB7, PLXDC2, BMP1, RCN3, COL10A1, GPNMB, TMEM158, ADAMTS12, GUCY1A3, PDLIM7, ACTN1, SFRP4, EFEMP2, SERPINF1, FSTL1, ASPN, IGFBP7, CLEC11A, AMIGO2, SALL4, SFRP2, CLDN1, CTHRC1, CST1, CDH3, FNDC1, PGF, SPHK1, ALDH1A3, WISP1, GUCY1B3, HES4, MGP, DOK5, C3, RARRES1, FLNA, CEBPB, SULF2, NRP1, ELOVL5, ISLR, LEF1, ZAK, PMEPA1, AEBP1, TNFRSF11B, SVIL, SPP1, GDPD5, OLFML2B, LOX, EMILIN1, PLEKHO1, HTRA1, GPR161, DGKH, ANTXR1, GXYLT2, PLAU, FSCN1, SRPX2, IGF2BP3, EPHB2, ANOS1, CEMIP, FBXO32, COMP, COL11A1, THBS4, PLEKHG2, E2F3, ADAM12, DNM1, ITGBL1, MFGE8, RIN3, NRP2, CTSL, CPXM1, ENG, NRK, MMP11, S100A10, DPYSL3, FMNL3, MYO1B, FKBP10, CST4, KLHL23, SPOCK1, FGD6, CCDC80, TNFSF4, BAG2, MLLT11, THBS1, TGM2, PLPPR4, CST2, ITGA5, MIR100HG, PLA2G7, VAC14, ZNF423, CRISPLD1, GINS4, NT5DC2, MMP7, FXYD5, GREM1, FOXC2, CLDN3, FAM83D, FJX1, OLR1, DUXAP10, KLK10, HS3ST3A1, ADAMTS6, SLCO2B1, LY6E, BOC, AHNAK2, HOXC10, SNX10, BUB1, DTL, FOXC1, IL32, MYL9, CXCL8, NOX4, CAP2, WNT2, ETV6, LILRB1, PDE3A, RHOJ, TREM1, SERPINE1, YBX2, TPM2, STC2, MXRA7, TREM2, PLEKHA4, MEOX2, CXCL9, SLC1A3, TAGLN, HOXC6

Down-regulated DEGs

MUC5AC, C8orf49, ZNF57, UBL3, MAGI1, AKR7A3, PSAPL1, MFSD4A, GATA4, SMIM6, ALDH6A1, DPCR1, TRIM50, NFE2L2, CLIC6, KLK11, FAM107B, TMPRSS2, MUC6, METTL7A, RASSF6, VSIG1, SGPP2, RAB27A, CWH43, WIPF3, ELOVL6, SVIP, PELI2, C1orf116, FMO5, ADTRP, HOMER2, SHROOM3, SMIM5, ELL2, AQP4, EPN3, CYSTM1, PPFIBP2, PBLD, FA2H, RNASE4, CAPN9, ATP11B, BEX5, C1orf210, FAM189A2, VSIG2, PTER, RDH12, CA2, CXCL17, PXMP2, PLPP5, SLC16A7, TPCN2, KCNE2, CLDN18, TMEM220, DGKD, CMTM4, SLC41A2, KCNJ15, SIDT2, ERO1B, DNER, ANKRD22, DHRS7, PAIP2B, CYP3A5, MYZAP, FBXL13, SSTR1, FGD4, FAM20A, CA9, ALAD, RAB27B, SOSTDC1, PDGFD, LIPH, TMED6, ALDH3A1, UBE2QL1, TMEM92, MECOM, ARHGEF28, RNASE1, SULT1B1, PDIA2, CPA2, ADAM28, VSTM2A, ADGRG2, PLLP, TMEM171, TMEM116, KLHDC7A, LDHD, ADRB2, SH3BGRL2, TFF1, EPB41L4B, PGC, IRS4, CNTN3, B4GALNT3, ATP4A, ARHGEF37, GCNT2, PPID, SGK2, CCKBR, MAL, ATP4B, RASSF10, SLC26A9, CYP3A43, HPGD, NEDD4L, NECTIN3, PTPRZ1, AKR1C3, IGFBP2, FAM46C, SHISA6, MUM1L1, HMGN2P46, FBP2, ANG, KIAA1804, SPINK2, GRAMD1C, SCGB2A1, GUCA2B, C16orf89, GKN1, AKR1B10, KCNJ16, PPP1R36, GATA6-AS1, ALDOB, SST, PCAT18, LIPF, GATA5, TMEM125, NTN4, ENPP6, GPT2, BCL2L15, TFF2, IQGAP2, PTPRN2, SYTL2, RPS6KA6, KIAA1324, PSCA, OASL, GABRB3, ASPA, SCNN1G, SLC7A8, SMPD3, LYPD6B, CYP2C18, ALDH1A1, PLAC8, AHCYL2, GIF, ASCL1, ESRRG, RAB11B-AS1, CHGA, PIGR, ACVR1C, NOSTRIN, SPINK7, ADH7,TSPAN12, ACKR4, GKN2, NRG4, PKIB, CAPN13, RNF128, NKX2-3, ATP8A1, ZBTB7C, SH3RF2, SCNN1B, GDPD1, SYTL5, TEX9, UGT2B15, HMGN5, B3GNT6, SULT2A1, GOLM1, PIWIL2, ACER2, CYP2C9, SOWAHA, ST6GALNAC1, GSTA4, ODAM, PRR15L, TMEM266, SCGN, SLC28A2, TMEM27, SELENBP1, ANKRD29, ATP13A4, HAPLN1, MAMDC2, C4orf19, REG1A, UPK1B, SCN3A, AMPD1, SLC4A4, FAM3B, SMIM24, ANXA10, IL1R2, AKR1C1, SLC14A1, HHIP, CTSE, LRRC66, KCNMB2, STYK1, GCNT1, NDOR1, IRX3, PRDM16, PER3, ZNF793-AS1, TCEA3, SCIN, NR3C2, DUSP4, SLC26A7, UNC5B-AS1, OSBPL7, XK, ARL14, FER1L4, MAP7D2, TMEM38A, ADAMTS15, CAPN8, TPH1, GATA6, SULT1C2, NQO1, KLF4, ITPKA, DDX60, SLC44A4, KBTBD12, RHBDL2, MUC1, KAZALD1, MST1L, DUOX2, EYA2, NEUROD1, TFCP2L1, PDZD3, PIK3C2G, RMST, JCHAIN, STK32B, HRASLS2, RFX6, TCAIM, GAS2, MRAP2, CYTIP, SERPINA4, CDHR3, GCKR, POU2AF1, RGS7, CYP2C19, HGD, SPINK1, PRSS12, PRLR, APOBEC1, TRPA1, GSTA1, NCKAP5, TRIQK, LRRC31, STX19, KRT20, BMP5, ATP2A3, LTF, IGH, ADH1C, IL1RN, LDLR, MGAM, TOX3, ABCC13, FCRL5

DEGs – differentially expressed genes.