Table 1. Fields in the Research-Tomogram record.
Description | |||
---|---|---|---|
floAddress* | cryptographic key of publisher | ||
info | title* | descriptive title of dataset (chosen at acquisition) | |
description | notes about publication process of the record | ||
tags | searchable tags, e.g. "tomogram," "etdb," "jensen.lab" | ||
details | date* | acquisition date | |
NCBItaxID | NCBI taxonomy identifier | ||
artNotes | notes about the dataset | ||
scopeName | acquisition microscope, e.g. "Caltech Polara" | ||
speciesName* | species of cell imaged | ||
strain | information about the specimen strain | ||
tiltSingleDual | single-axis or dual-axis tilt acquisition scheme | ||
defocus | imaging defocus (μm) | ||
dosage | imaging electron dosage (e/Å2) | ||
tiltConstant | 1: if constant angular increment; 0: if other method | ||
tiltMin | minimum of acquisition tilt range (degrees) | ||
tiltMax | maximum of acquisition tilt range (degrees) | ||
tiltStep | tilt increment (degrees) | ||
swAquisition | software used for acquisition | ||
swReconstruction | software used for reconstruction | ||
magnification | acquisition magnification (X) | ||
emdb | EMDB code if record is also available on EMDB | ||
microscopist | scientist who acquired tilt-series | ||
institution | e.g. "Caltech" | ||
lab | e.g. "Jensen Lab" | ||
sid | internal database identifier (laboratory specific) | ||
storage | network* | e.g. "IPFS" | |
files** | fname* | file name | |
dname | name to be displayed in interface | ||
fsize | file size (bytes) | ||
type | e.g. "Tomogram" or "Image" | ||
subtype | e.g. "Tiltseries" or "Reconstruction" | ||
ctype | content type, e.g. "image/jpeg" or "video/mp4" | ||
location* | hash of file locations for retrieval | ||
payment | payment information (N/A for this blockchain use) | ||
timestamp* | time of publication to blockchain | ||
type* | "Research" | ||
subtype | "Tomogram" |
* mandatory field
**stores the indicated information for each file associated with the dataset