Table 2. Top 20 variants; number of reads across dataset as measured by (i) mapping to reference VSG database and by (ii) sequence clustering; the relevant TREU927 reference VSG is indicated in the first column.
| VSG reference gene | Reads by mapping to VSGs | Percentage of total | Reads by sequence clustering* | Percentage of total | Hall Sets |
|---|---|---|---|---|---|
| Total | 296937 | 100 | 33205 | 100 | |
| Tb08.27P2.380 | 141822 | 47.76 | 14543 | 43.80 | Set_23 |
| Tb09.v4.0077 | 46264 | 15.58 | 5951 | 17.92 | Set_08 |
| Tb927.4.5730 | 23643 | 7.96 | 2499 | 7.53 | |
| Tb927.10.10 | 13167 | 4.43 | 1294 | 3.90 | |
| Tb11.v5.0932 | 10187 | 3.43 | 1435 | 4.32 | |
| Tb927.9.300 | 8751 | 2.94 | 913 | 2.75 | |
| Tb09.v4.0088 | 7947 | 2.67 | 1223 | 3.68 | Set_36 |
| Tb05.5K5.330 | 7865 | 2.64 | 874 | 2.63 | Set_22 |
| Tb927.9.16490 | 3669 | 1.23 | 413 | 1.24 | |
| Tb927.3.480 | 2984 | 1 | 368 | 1.11 | |
| Tb11.57.0047 | 2783 | 0.93 | 379 | 1.14 | |
| Tb927.11.20300 | 2353 | 0.79 | 247 | 0.74 | |
| Tb927.1.05 | 1990 | 0.67 | 280 | 0.84 | |
| Tb927.4.5570 | 1622 | 0.54 | 200 | 0.60 | |
| Tb10.v4.0061 | 1414 | 0.47 | 181 | 0.55 | Set_04 |
| Tb11.v5.0599 | 1400 | 0.47 | - | - | |
| Tb927.9.580 | 1276 | 0.42 | - | - | |
| Tb927.5.4700 | 1168 | 0.39 | 175 | 0.53 | |
| Tb09.v4.0075 | 1133 | 0.38 | 140 | 0.42 | Set_35 |
| Tb11.1451 | 1126 | 0.37 | 121 | 0.36 |
* The subset of reads with predicted ORFs was used for the clustering algorithm analysis.