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. Author manuscript; available in PMC: 2020 May 1.
Published in final edited form as: Neuroimage. 2019 Feb 7;191:337–349. doi: 10.1016/j.neuroimage.2019.02.016

Table 3:

External data set results for deep gray matter nuclei: Dice metrics (between manual delineation and automated segmentation using the QSM/T1 multi-atlas approach), extracted structure volumes (in mm3) and tissue susceptibility values (in ppm)

Measures Dice Volume (mm3) Susceptibility (ppm)
ROIs Manual QSM/T1 Manual QSM/T1
CN 0.81±0.05 4068±449 4048±444 0.039±0.005 0.038±0.006
GP 0.83±0.03 2218±239 2589±261 0.094±0.021 0.096±0.017
Putamen 0.77±0.03 3778±293 3819±326 0.053±0.012 0.041±0.007
Thalamus 0.78±0.04 4716±679 4704±473 −0.003±0.006 −0.003±0.006
Pulvinar 0.75±0.05 919±149 973±208 0.038±0.013 0.038±0.011
STN/SN 0.81±0.04 809±118 663±78 0.060±0.016 0.069±0.013
RN 0.82±0.04 300±42 264±38 0.052±0.012 0.060±0.011
DN 0.74±0.07 1023±249 677±208 0.038±0.014 0.051±0.014

CN: caudate nucleus, GP: globus pallidus including both globus pallidus externus and internus (GPe/GPi), STN/SN: subthalamic nucleus and substantia nigra, RN: red nucleus, DN: dentate nucleus.