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. Author manuscript; available in PMC: 2020 Jan 4.
Published in final edited form as: J Proteome Res. 2018 Oct 31;18(1):349–358. doi: 10.1021/acs.jproteome.8b00651

Figure 2.

Figure 2.

Flowchart showing the heuristic determination of confidence thresholds for spliced peptide discoveries. The inputs required for this heuristic determination are the highest scoring spliced and nonspliced sequences for each spectrum, which are identified by Neo-Fusion through separate spliced and nonspliced searches.