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. Author manuscript; available in PMC: 2020 Jan 4.
Published in final edited form as: J Proteome Res. 2018 Oct 26;18(1):86–94. doi: 10.1021/acs.jproteome.8b00365

Figure 5: Number of peptides identified by Siren and fragment deconvolution by DIA-Umpire.

Figure 5:

The full pipeline of DIA-Umpire (DIA-Umpire full) and a pipeline consisting Siren and DIA-Umpire’s fragment deconvolution step ( Siren + DIA-Umpire FD) were used to identify peptides via database search in four data sets. For Siren + DIA-Umpire FD, sets of peptide-spectrum matches were filtered by the false-discovery proportions (FDP) of their precursors, estimated by Siren. (0.01 m/z tolerance).