Table 1:
miRNA | miRNA abundance (TP10M) | Probe sequence | Probe Tm (°C) | Hybridization temperature (°C) | Probe concentration |
---|---|---|---|---|---|
zma-miR2118 | 4,064 | /5DigN/TAGGAATGGGAGGCATCGGGAA | 86 | 53.3 | 10 nM |
24-phasiRNA | 16,318 | GGCCAAGGTCCGGTCCAACAACT/36-FAM/ | 87 | 53.3 | 10 nM |
zma-miR2275 | 12,100 | GGTTCAGTTGCCTTAATCCT/3DigN/ | 88 | 53.3 | 250 nM |
24-phasiRNA for litchi | 837 | TCTCATGTTTTCTCATAGGTCT/3DigN/ | 83 | 53.3 | 10 nM |
Osa-miR1874 | 59,000 | ATCGGGTTACACCTCCATCCATA/3Dig_N/ | 86 | 53.3 | 100 nM |
Scrambled control | NA | /5DigN/GTGTAACACGTCTATACGCCCA | 87 | 53.3 | 10 nM |
Footnote: Tm, melting temperature; 5DigN, 5’ Digoxigenin NHS Ester