Table 2.
Localization of gut-specific features in the genome of P. polymyxa A18.
| Region No. | Name of Loci | Genomic Region | NCBI Accession no. | Product description |
|---|---|---|---|---|
| R1. | Type I Restriction Modification System | 897034..898581 | WP_038978098.1 | Restriction endonuclease, DNA-methyltransferase subunit M |
| 898578..899840 | WP_017426209.1 | Type I RM system, specificity subunit S | ||
| 901071..904169 | WP_017426212.1 | Type I RM system, restriction subunit R | ||
| 904193..904486 | WP_017426213.1 | Type I RM system, DNA-methyltransferase subunit M | ||
| R2. | Adhesin | 1409160..1409930 | WP_017426498.1 | Large adhesin |
| R3. | Widespread Colonization Island (including Type IV pilli) | 1481503..1482750 | WP_017426545.1 | TadA |
| 1482747..1483538 | WP_017426546.1 | TadB | ||
| 1483551..1484429 | WP_038978149.1 | TadC | ||
| 1484440..1484634 | WP_016820682.1 | Hypothetical Protein | ||
| 1484634..1485302 | WP_017426549.1 | TadE | ||
| 1485343..1487559 | WP_017426550.1 | Hypothetical Protein | ||
| 1487528..1488523 | WP_017426551.1 | Hypothetical Protein | ||
| 1488611..1489123 | WP_026065394.1 | TadV | ||
| 1489185..1490969 | WP_017426553.1 | Forkhead Associated Protein | ||
| R4. | CRISPR/Cas System | 2210905..2213388 | WP_017427970.1 | Cas3 |
| 2213502..2214218 | WP_017427971.1 | Cas5d | ||
| 2214219..2216126 | WP_017427972.1 | Csd1 | ||
| 2216209..2217084 | WP_017427973.1 | Cas7 | ||
| 2217071..2217730 | WP_017427974.1 | Cas4 | ||
| 2217727..2218758 | WP_017427975.1 | Cas1 | ||
| 2218769..2219059 | WP_017427976.1 | Cas2 | ||
| R5. | Phage related proteins | complement (2996310.. 3036881) | — | Phage proteins |
| 3037704..3038891 | WP_016822090.1 | Phage integrase | ||
| R6. | CRISPR/Cmr System | complement (3761099..3761932) | WP_017428210.1 | Cmr6 |
| complement (3761952..3762323) | WP_017428211.1 | Cmr5 | ||
| complement (3762320..3763279) | WP_017428212.1 | Cmr4 | ||
| complement (3763269..3764558) | WP_049885704.1 | Cmr3 | ||
| complement (3764527..3766347) | WP_038978046.1 | Cmr2 | ||
| Complement (3766347..3767900) | WP_017428215.1 | Cmr1 | ||
| R7. | Flagellar Biosynthesis Proteins | Complement (5061524..5063260) | WP_038978178.1 | Motility accessory factor |
| Complement (5063812..5064195) | WP_017427105.1 | Flagellar biosynthesis protein FliS | ||
| Complement (5064210..5065682) | WP_017427106.1 | Flagellar hook-associated protein FliD | ||
| Complement (5065696..5066073) | WP_017427107.1 | Flagellin protein FlaG | ||
| Complement (5066242..5067015) | WP_017427108.1 | Flagellin protein FlaA | ||
| Complement (5067559..5068005) | WP_017427110.1 | Flagellar assembly factor FliW | ||
| Complement (5068089..5068997) | WP_017427111.1 | Flagellar hook-associated protein FlgL | ||
| Complement (5069022..5070602) | WP_017427112.1 | Flagellar hook-associated protein FlgK |