Table 4.
Biomolecular typing results related to MLVA, in silico MLST and AMR genotype.
| MLVA | MLST | AMR genotype | Template | Related Phenotype | query_coverage | |
|---|---|---|---|---|---|---|
| Case 1 | 3-13-12-n.a.-0211 | ST34 | ASSuT | aph(3″)-Ib_5_AF321551 | Streptomycin-Resistance | 100.00 |
| aph(6)-Id_1_M28829 | Aminoglycoside Resistance | 100.00 | ||||
| blaTEM-1B_1_JF910132 | Beta-lactam Resistance | 100.00 | ||||
| sul2_3_HQ840942 | Sulphonamide Resistance | 100.00 | ||||
| tet(B)_4_AF326777 | Tetracycline Resistance | 100.00 | ||||
| Case 2 | 3-16-8-n.a.-0211 | ST34 | ASSuT | aph(3″)-Ib_5_AF321551 | Streptomycin-Resistance | 100.00 |
| aph(6)-Id_1_M28829 | Aminoglycoside Resistance | 100.00 | ||||
| blaTEM-1B_1_JF910132 | Beta-lactam Resistance | 100.00 | ||||
| sul2_3_HQ840942 | Sulphonamide Resistance | 100.00 | ||||
| tet(B)_4_AF326777 | Tetracycline Resistance | 100.00 | ||||
| Case 3 | 3-15-8-n.a.-0211 | ST34 | ASSuT | aph(3″)-Ib_5_AF321551 | Streptomycin-Resistance | 100.00 |
| aph(6)-Id_1_M28829 | Aminoglycoside Resistance | 100.00 | ||||
| blaTEM-1B_1_JF910132 | Beta-lactam Resistance | 100.00 | ||||
| sul2_3_HQ840942 | Sulphonamide Resistance | 100.00 | ||||
| tet(B)_4_AF326777 | Tetracycline Resistance | 100.00 |
Abbreviations: MLVA, Multiple-Locus Variable-number tandem-repeat Analysis; MLST, Multilocus Sequence Typing; AMR, Antimicrobial Resistance; ST, Sequence Type; ASSuT, Ampicillin, Streptomycin, Sulfonamide and Tetracycline resistant isolate.