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. 2019 Apr 15;9:6095. doi: 10.1038/s41598-019-42640-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Horse MSY tree. A maximum parsimony tree showing the horse MSY phylogeny based on 2,192 scY variants detected in 139 males. The tree is rooted with the donkey and bootstrap values of 90% or higher are shown. The Przewalski’s horses are shown in brown. Blueish clades correspond to early splitting Asian samples (O), Northern European breeds (N and I) and other autochthonous Asian samples (M, Y and J). The three clearly separated crown group clades are represented in pink (H), green (A) and orange (T) shades. Assigned haplogroups are shown on the right. A detailed haplotype network with variants is shown in Supplementary Fig. S4, variant details are given in Supplementary Table S8.