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. 2019 Apr 9;10:749. doi: 10.3389/fmicb.2019.00749

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Copyright © 2019 Alves, Siqueira, Prellwitz, Botelho, Da Hora, Sanabani, Recordon-Pinson, Fleury, Soares and Soares.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenetic analysis of HIV near full-length genomes (NFLG) from this study. The maximum likelihood analysis was performed with 1,000 bootstrap iterations. The tree contains 28 HIV-1 proviral sequences obtained from Hospital Federal de Ipanema (HFI), Hospital Universitário Clementino Fraga Filho-UFRJ (HU-UFRJ), Rio de Janeiro, and Hospital Universitário Dr. Miguel Riet Corrêa Jr. (HU-FURG), Rio Grande do Sul (represented in bold) and reference sequences of HIV-1 subtypes (named by subtype, country, year, and GenBank accession number). HI sequences determined in a previous study (Alves et al., 2017) are named with their respective GenBank accession numbers. Only bootstrap values greater than 0.7 are shown.