Table 2.
Binding free energies predicted by MM/GBSA (ε = 2).
| Compound | ΔGelea | ΔGvdwb | ΔGSAc | ΔGGBd | ΔGbinde | pIC50 |
|---|---|---|---|---|---|---|
| 3 | −15.42 ± 0.26 | −42.86 ± 0.31 | −4.07 ± 0.02 | 19.64 ± 0.23 | −42.71 ± 0.26 | 6.509 |
| 4 | −13.18 ± 0.29 | −46.94 ± 0.28 | −4.24 ± 0.01 | 18.08 ± 0.18 | −46.27 ± 0.24 | 7.447 |
| 5 | −17.49 ± 0.30 | −45.83 ± 0.32 | −4.24 ± 0.01 | 21.82 ± 0.22 | −45.73 ± 0.27 | 7.553 |
| 6 | −12.93 ± 0.26 | −45.48 ± 0.26 | −4.21 ± 0.01 | 17.27 ± 0.18 | −45.36 ± 0.22 | 7.695 |
| 7 | −12.45 ± 0.26 | −48.35 ± 0.28 | −4.48 ± 0.02 | 22.45 ± 0.23 | −42.83 ± 0.29 | 5.368 |
| 10 | −16.74 ± 0.25 | −56.63 ± 0.30 | −5.06 ± 0.01 | 22.75 ± 0.15 | −55.67 ± 0.26 | 9.523 |
| 14 | −19.36 ± 0.33 | −52.69 ± 0.34 | −4.62 ± 0.01 | 23.82 ± 0.22 | −52.84 ± 0.29 | 9.097 |
| 15 | −14.20 ± 0.41 | −53.17 ± 0.35 | −4.72 ± 0.02 | 21.95 ± 0.27 | −50.14 ± 0.33 | 6.393 |
| 18 | −17.93 ± 0.39 | −49.79 ± 0.28 | −4.47 ± 0.01 | 26.30 ± 0.30 | −45.89 ± 0.26 | 7.450 |
| 19 | −20.13 ± 0.25 | −53.49 ± 0.24 | −4.72 ± 0.01 | 28.18 ± 0.18 | −50.16 ± 0.23 | 6.697 |
| 20 | −8.72 ± 0.27 | −49.09 ± 0.26 | −4.28 ± 0.02 | 21.78 ± 0.29 | −40.31 ± 0.25 | 7.387 |
| 21 | −18.81 ± 0.40 | −55.95 ± 0.31 | −5.01 ± 0.01 | 25.87 ± 0.24 | −53.90 ± 0.24 | 8.699 |
| 22 | −9.61 ± 0.24 | −49.16 ± 0.34 | −4.52 ± 0.02 | 20.35 ± 0.20 | −42.94 ± 0.30 | 5.602 |
| 23 | −22.27 ± 0.33 | −54.19 ± 0.35 | −5.06 ± 0.02 | 27.49 ± 0.25 | −54.04 ± 0.29 | 8.155 |
| 24 | −10.51 ± 0.29 | −58.38 ± 0.29 | −5.30 ± 0.01 | 18.92 ± 0.20 | −55.27 ± 0.29 | 8.125 |
| 25 | −12.18 ± 0.24 | −55.17 ± 0.30 | −4.92 ± 0.02 | 21.06 ± 0.21 | −51.21 ± 0.26 | 8.004 |
| 29 | −19.91 ± 0.25 | −46.18 ± 0.34 | −4.27 ± 0.02 | 24.03 ± 0.16 | −46.34 ± 0.30 | 7.398 |
| 30 | −15.77 ± 0.22 | −47.00 ± 0.27 | −4.16 ± 0.01 | 21.24 ± 0.17 | −45.68 ± 0.25 | 7.699 |
| 31 | −13.13 ± 0.30 | −48.94 ± 0.27 | −4.36 ± 0.01 | 18.90 ± 0.19 | −47.53 ± 0.21 | 8.538 |
| 32 | −16.59 ± 0.31 | −56.01 ± 0.34 | −4.99 ± 0.01 | 23.12 ± 0.19 | −54.47 ± 0.29 | 9.398 |
| 33 | −12.97 ± 0.25 | −63.69 ± 0.24 | −5.44 ± 0.01 | 27.04 ± 0.19 | −55.07 ± 0.23 | 9.328 |
Electrostatic interaction.
Van der Waals interaction.
Non-polar contribution of the solvation effect.
Polar contribution of the solvation effect.
Binding free energy.
All above values are shown as mean ± standard error of mean.