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. 2019 Apr 9;10:345. doi: 10.3389/fphar.2019.00345

Table 2.

Binding free energies predicted by MM/GBSA (ε = 2).

Compound ΔGelea ΔGvdwb ΔGSAc ΔGGBd ΔGbinde pIC50
3 −15.42 ± 0.26 −42.86 ± 0.31 −4.07 ± 0.02 19.64 ± 0.23 −42.71 ± 0.26 6.509
4 −13.18 ± 0.29 −46.94 ± 0.28 −4.24 ± 0.01 18.08 ± 0.18 −46.27 ± 0.24 7.447
5 −17.49 ± 0.30 −45.83 ± 0.32 −4.24 ± 0.01 21.82 ± 0.22 −45.73 ± 0.27 7.553
6 −12.93 ± 0.26 −45.48 ± 0.26 −4.21 ± 0.01 17.27 ± 0.18 −45.36 ± 0.22 7.695
7 −12.45 ± 0.26 −48.35 ± 0.28 −4.48 ± 0.02 22.45 ± 0.23 −42.83 ± 0.29 5.368
10 −16.74 ± 0.25 −56.63 ± 0.30 −5.06 ± 0.01 22.75 ± 0.15 −55.67 ± 0.26 9.523
14 −19.36 ± 0.33 −52.69 ± 0.34 −4.62 ± 0.01 23.82 ± 0.22 −52.84 ± 0.29 9.097
15 −14.20 ± 0.41 −53.17 ± 0.35 −4.72 ± 0.02 21.95 ± 0.27 −50.14 ± 0.33 6.393
18 −17.93 ± 0.39 −49.79 ± 0.28 −4.47 ± 0.01 26.30 ± 0.30 −45.89 ± 0.26 7.450
19 −20.13 ± 0.25 −53.49 ± 0.24 −4.72 ± 0.01 28.18 ± 0.18 −50.16 ± 0.23 6.697
20 −8.72 ± 0.27 −49.09 ± 0.26 −4.28 ± 0.02 21.78 ± 0.29 −40.31 ± 0.25 7.387
21 −18.81 ± 0.40 −55.95 ± 0.31 −5.01 ± 0.01 25.87 ± 0.24 −53.90 ± 0.24 8.699
22 −9.61 ± 0.24 −49.16 ± 0.34 −4.52 ± 0.02 20.35 ± 0.20 −42.94 ± 0.30 5.602
23 −22.27 ± 0.33 −54.19 ± 0.35 −5.06 ± 0.02 27.49 ± 0.25 −54.04 ± 0.29 8.155
24 −10.51 ± 0.29 −58.38 ± 0.29 −5.30 ± 0.01 18.92 ± 0.20 −55.27 ± 0.29 8.125
25 −12.18 ± 0.24 −55.17 ± 0.30 −4.92 ± 0.02 21.06 ± 0.21 −51.21 ± 0.26 8.004
29 −19.91 ± 0.25 −46.18 ± 0.34 −4.27 ± 0.02 24.03 ± 0.16 −46.34 ± 0.30 7.398
30 −15.77 ± 0.22 −47.00 ± 0.27 −4.16 ± 0.01 21.24 ± 0.17 −45.68 ± 0.25 7.699
31 −13.13 ± 0.30 −48.94 ± 0.27 −4.36 ± 0.01 18.90 ± 0.19 −47.53 ± 0.21 8.538
32 −16.59 ± 0.31 −56.01 ± 0.34 −4.99 ± 0.01 23.12 ± 0.19 −54.47 ± 0.29 9.398
33 −12.97 ± 0.25 −63.69 ± 0.24 −5.44 ± 0.01 27.04 ± 0.19 −55.07 ± 0.23 9.328
a

Electrostatic interaction.

b

Van der Waals interaction.

c

Non-polar contribution of the solvation effect.

d

Polar contribution of the solvation effect.

e

Binding free energy.

All above values are shown as mean ± standard error of mean.