. 2019 Mar 1;11(3):205. doi: 10.3390/v11030205

Table 2.

Summary of the 26 nearly complete viral genomes. Bivalve species, total number of viral sequences, non-redundant (nr) sequences, and number of “nearly complete viral genomes” are reported. Sequenced tissue and geographical origins of the RNA samples, library type, virus name, and virus distribution in transcriptomes of other bivalves and virus coverage are also reported (as is the total number of viral reads, and as a percentage over the total reads). The BLAST similarities are reported with the E-values, NCBI ID, and the description and percentage of identity.

Species	Viral Sequences			Tissue	Geographic Origin	Library Type	Virus Name	Virus Distribution among Bivalve RNA-seq	Total Viral Reads	% of Viral Reads *	NCBI ID	Blastp
Species	Total	nr	Nearly Complete	Tissue	Geographic Origin	Library Type	Virus Name	Virus Distribution among Bivalve RNA-seq	Total Viral Reads	% of Viral Reads *	NCBI ID	E-Value	Description	Identity %
Atrina pectinata	17	15	1	mixed	China	PA	Atrpec_virus1	\	2104	0.00202	MG210792	0	Wenzhou picorna-like virus 26	99.57
Crassostrea gigas	148	109	13	gills	Italy	PA	Cragig_virus3	mytgal	898	0.00135	MG210795	\	\	\
						PA	Bivalve hepelivirus G	mytgal	4058	0.00611	KX158876	0	Bivalve hepelivirus G	99.95
						PA	Bivalve RNA virus G5	\	1382	0.00173	KX158874	0	Bivalve RNA virus G5	100
						PA	Bivalve RNA virus G3	mytgal	1286	0.00161	KX158873	0	Bivalve RNA virus G3	100
						PA	Cragig_virus1	\	890	0.00134	MG210793	\	\	\
						PA	Cragig_virus2	mytgal	468	0.00058	MG210794	0	Wenzhou picorna-like virus 24	93.6
						PA	Bivalve RNA virus G1	mytgal	37902	0.04732	KX158871	0	Bivalve RNA virus G1	100
						PA	AY337486	mytgal	5156	0.00644	AY337486	0	Heterosigma akashiwo RNA virus	100
						RD	Cragig_virus6	\	30047	0.05554	MK561968	1^-108	Beihai picorna-like virus 21	66
						RD	Cragig_virus7	\	5493	0.01015	MK561969	3^-40	Wenzhou picorna-like virus 41	70
						RD	Cragig_virus8	\	955	0.00177	MK561970	0	Rhizosolenia setigera RNA virus	69
						RD	Cragig_virus9	\	9200	0.01701	MK561971	\	\	\
						RD	Cragig_virus10	\	568	0.00105	MK561972	\	\	\
Elliptio complanata	2	1	1	mixed	USA	PA	Elicom_virus1	\	2268	0.00552	MG210796	\	\	\
Mizuhopecten yessoensis	25	25	1	mixed	China	PA	Mizyes_virus1	\	1974	0.00522	MG210800	\	\	\
Mytilus coruscus			1	mixed	China	PA	Mytcor_virus1	\	4460	0.01028	MG210801	0	Pitaya virus X isolate P37	98.24
Mytilus edulis	37	33	1	mixed	France	PA	Mytedu_virus1	\	1936	0.00694	MG210802	0	Barns Ness breadcrumb sponge aquatic picorna-like virus 2	99
Mytilus galloprovincialis	115	52	3	gills	Italy	PA	Bivalve RNA virus G4	cragig, atrpec	4818	0.00713	KX158875	0	Bivalve RNA virus G4	99.77
						PA	Mytgal_virus1	cragig	\	\	MG210803	\	\	\
						PA	Mytgal_virus2	cragig	1432	0.00212	MG210804	0	Wenzhou picorna-like virus 51	78.7
Ruditapes philippinarum	121	49	5	gills	China	PA	Rudphi_virus1	\	9842	0.02869	MG210805	0	Wenzhou picorna-like virus 38	72.9
				gills	China	PA	Rudphi_virus2	\	1031	0.00301	MG210806	\	\	\
				gills	China	PA	Rudphi_virus3	\	181992	0.29884	MG210807	0	Wenzhou gastropodes virus 2	97.3
				gills	China	PA	Rudphi_virus4	ruddec, ostste, ostlur, cracor, cragig, mytedu	5388365	3.06157	MG210808	0	Wenzhou gastropodes virus 1	92
				larvae	USA	PA	Rudphi_virus5	\	19965	0.02936	MG210809	0	Marine RNA virus BC-4	70

Abbreviations: ruddec, R. decussatus; rudphi, R. philippinarum; ostste, O. stentina; ostlur, O. lurida; cragig, C. gigas; atrpec, A. pectinata; mytgal, M. galloprovincialis; mytedu, M. edulis; PA, polyadenylated RNA library; RD, ribo-depleted RNA library; * percentage of reads from the RNA-seq sample with the highest number of mapped reads, mapping to the given virus (counting only correctly paired reads).