Table 2.

Insect-specific viruses discovered by de novo contig assembly of small RNA reads. Listed are the viruses for which a contig blast-hit was retrieved. Shown is the genome size of the subject, the nucleotide coverage of query contigs, the coverage expressed as percentage of query nucleotide coverage length compared to the length of the subject, the number of mismatching nucleotides between the query and the subject, and the percentage nucleotide identity between the query and the subject sequence.

Virus	Virus Family	Genome	Segment	Genome Size (nts)	Cell Line	Coverage (nts)	Coverage (%)	Mismatches (n)	Identity (%)
CYV	Birnaviridae	dsRNA	A	3,429	U4.4	3,429	100	38	99
			B	3,254	U4.4	3,254	100	30	99
PCLV	Phenuiviridae	-ssRNA	L	6,769	CT	6,671	99	114	98
					Aag2	0	0	N/A	N/A
			M	3,849	CT	2,628	68	54	98
					Aag2	3,213	83	2	100
			S	1,362	CT	1,362	100	62	95
					Aag2	345	25	0	100
CLBOV	Flaviviridae	+ssRNA	N/A	10,735	CT	7,674	71	21	100
FHV	Nodaviridae	+ssRNA	1	3,107	CT	359	12	17	95
			2	1,365	CT	333	24	23	93
CxNV1	Narna-like	+ssRNA*	N/A	3,105	CT	3,105	100	81	97
AeDNV	Parvoviridae	ssDNA	N/A	3,937	Aag2	913	23	41	96

* The discovered narnavirus-like virus appears to have an ambisense coding strategy, but is referred to as a (+)-strand RNA virus due to its phylogenetic connection with the Narnaviridae family.