Table 2.
Genotypic and allelic frequencies and population indexes for four single nucleotide polymorphisms (SNPs) of the goat POU class 1 homeobox 1 (POU1F1) gene in Shaanbei white cashmere (SBWC) goats.
| Loci Names | Observed Genotypes (N) | Genotype Frequencies | Allele Frequencies | Ho | He | Ne | PIC | χ2 |
|---|---|---|---|---|---|---|---|---|
| (p Value) | ||||||||
| c.682G > T | GG (526) | 0.884 | 0.938 (G) | 0.883 | 0.117 | 1.132 | 0.110 | 3.600 (p = 0.058) |
| GT (64) | 0.108 | 0.062 (T) | ||||||
| TT (5) | 0.008 | |||||||
| c.723T > G | TT (354) | 0.581 | 0.767 (T) | 0.642 | 0.358 | 1.557 | 0.294 | 0.868 (p = 0.352) |
| TG (226) | 0.371 | 0.233 (G) | ||||||
| GG (29) | 0.048 | |||||||
| c.837T > C | TT (456) | 0.750 | 0.860 (T) | 0.759 | 0.241 | 1.317 | 0.212 | 4.255 (p = 0.039) |
| TC (134) | 0.220 | 0.140 (C) | ||||||
| CC (18) | 0.030 | |||||||
| c.876 + 110T > C | TT (609) | 1.000 | 1.000 (T) | 1.000 | 1.000 | 1.000 | 1.000 | - |
| TC (0) | 0.000 | 0.000 (C) | ||||||
| CC (0) | 0.000 |
Note: Ho, homozygosity; He, heterozygosity; Ne, effective allele numbers; PIC, polymorphism information content.