Table 1.
Strain (Initial Isolate/ Final Isolate) |
Duration of Persistence (Days) | Hag/MID Expression | Sequence Immediately Downstream of Start Codon | ||
---|---|---|---|---|---|
Initial Isolate |
Final Isolate |
Initial Isolate |
Final Isolate |
||
5P47B2/ 5P54B2 |
260 | + | − | 6Gs in frame | 7Gs out of frame |
142P77B1a/ 142P87B1 |
296 | + | − | 6Gs in frame | 7Gs out of frame |
173P27B1b/ 173P31B1b |
134 | + | − | 6Gs in frame | 6Gs in frame (downstream in-frame stop codon) |
74P50B1/ 74P58B1 |
253 | − | − | 1Ac+9Gs out of frame | 1Ac + 9Gs out of frame |
46P58B1/ 46P73B1a |
435 | − | − | 1Ac+9Gs out of frame | 1Ac + 9Gs out of frame |
aMultilocus sequence type and Hag/MID sequence determined by polymerase chain reaction.
bGenome sequence determined on Illumina platform. Remaining isolates determined on Pacific Biosciences (PacBio) Sequel platform.
cAn additional A was present immediately upstream of the polynucleotide G repeat.